FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1888, 416 aa 1>>>pF1KE1888 416 - 416 aa - 416 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2865+/-0.000351; mu= 14.0764+/- 0.022 mean_var=120.9100+/-24.031, 0's: 0 Z-trim(117.5): 42 B-trim: 37 in 1/53 Lambda= 0.116639 statistics sampled from 29447 (29489) to 29447 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.346), width: 16 Scan time: 9.060 The best scores are: opt bits E(85289) NP_001177874 (OMIM: 601711) TNF receptor-associate ( 416) 2817 485.0 1.4e-136 NP_005649 (OMIM: 601711) TNF receptor-associated f ( 416) 2817 485.0 1.4e-136 NP_001177876 (OMIM: 601711) TNF receptor-associate ( 294) 1936 336.7 4.7e-92 XP_011517277 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 879 159.0 2.4e-38 XP_011517278 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 879 159.0 2.4e-38 XP_011517279 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 879 159.0 2.4e-38 NP_066961 (OMIM: 601895) TNF receptor-associated f ( 501) 879 159.0 2.4e-38 XP_016870584 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 879 159.0 2.4e-38 XP_011517276 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 879 159.0 2.4e-38 XP_011517280 (OMIM: 601895) PREDICTED: TNF recepto ( 501) 879 159.0 2.4e-38 XP_016870583 (OMIM: 601895) PREDICTED: TNF recepto ( 533) 879 159.0 2.5e-38 XP_011517275 (OMIM: 601895) PREDICTED: TNF recepto ( 556) 879 159.0 2.6e-38 NP_663777 (OMIM: 601896,614849) TNF receptor-assoc ( 568) 788 143.7 1.1e-33 XP_016877106 (OMIM: 601896,614849) PREDICTED: TNF ( 568) 788 143.7 1.1e-33 XP_016877107 (OMIM: 601896,614849) PREDICTED: TNF ( 568) 788 143.7 1.1e-33 NP_003291 (OMIM: 601896,614849) TNF receptor-assoc ( 568) 788 143.7 1.1e-33 NP_663778 (OMIM: 601896,614849) TNF receptor-assoc ( 543) 725 133.1 1.6e-30 XP_016877108 (OMIM: 601896,614849) PREDICTED: TNF ( 543) 725 133.1 1.6e-30 NP_001029082 (OMIM: 602356) TNF receptor-associate ( 557) 722 132.6 2.4e-30 XP_016857710 (OMIM: 602356) PREDICTED: TNF recepto ( 557) 722 132.6 2.4e-30 NP_004610 (OMIM: 602356) TNF receptor-associated f ( 557) 722 132.6 2.4e-30 NP_665702 (OMIM: 602356) TNF receptor-associated f ( 557) 722 132.6 2.4e-30 NP_001306136 (OMIM: 602356) TNF receptor-associate ( 568) 722 132.6 2.4e-30 XP_011508261 (OMIM: 602356) PREDICTED: TNF recepto ( 568) 722 132.6 2.4e-30 XP_011508262 (OMIM: 602356) PREDICTED: TNF recepto ( 568) 722 132.6 2.4e-30 XP_011508259 (OMIM: 602356) PREDICTED: TNF recepto ( 631) 722 132.7 2.6e-30 XP_011535418 (OMIM: 601896,614849) PREDICTED: TNF ( 516) 720 132.3 2.8e-30 XP_011535420 (OMIM: 601896,614849) PREDICTED: TNF ( 485) 671 124.0 8.2e-28 NP_001186356 (OMIM: 601896,614849) TNF receptor-as ( 485) 671 124.0 8.2e-28 XP_011535419 (OMIM: 601896,614849) PREDICTED: TNF ( 512) 671 124.0 8.5e-28 XP_011523810 (OMIM: 602464) PREDICTED: TNF recepto ( 352) 374 73.9 7.1e-13 XP_011523809 (OMIM: 602464) PREDICTED: TNF recepto ( 352) 374 73.9 7.1e-13 XP_011523808 (OMIM: 602464) PREDICTED: TNF recepto ( 454) 374 74.0 8.6e-13 XP_011523807 (OMIM: 602464) PREDICTED: TNF recepto ( 461) 374 74.0 8.7e-13 NP_004286 (OMIM: 602464) TNF receptor-associated f ( 470) 374 74.0 8.8e-13 XP_011523806 (OMIM: 602464) PREDICTED: TNF recepto ( 477) 374 74.0 8.9e-13 NP_665802 (OMIM: 602355) TNF receptor-associated f ( 522) 373 73.9 1.1e-12 NP_004611 (OMIM: 602355) TNF receptor-associated f ( 522) 373 73.9 1.1e-12 >>NP_001177874 (OMIM: 601711) TNF receptor-associated fa (416 aa) initn: 2817 init1: 2817 opt: 2817 Z-score: 2572.9 bits: 485.0 E(85289): 1.4e-136 Smith-Waterman score: 2817; 100.0% identity (100.0% similar) in 416 aa overlap (1-416:1-416) 10 20 30 40 50 60 pF1KE1 MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGEDQICPKCRGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGEDQICPKCRGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQSVQEHEVTSQTSHLNLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQSVQEHEVTSQTSHLNLLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQEELALQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQEELALQH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 QTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 YGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETST :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETST 370 380 390 400 410 >>NP_005649 (OMIM: 601711) TNF receptor-associated facto (416 aa) initn: 2817 init1: 2817 opt: 2817 Z-score: 2572.9 bits: 485.0 E(85289): 1.4e-136 Smith-Waterman score: 2817; 100.0% identity (100.0% similar) in 416 aa overlap (1-416:1-416) 10 20 30 40 50 60 pF1KE1 MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGEDQICPKCRGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MASSSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGEDQICPKCRGE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQSVQEHEVTSQTSHLNLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DLQSISPGSRLRTQEKAHPEVAEAGIGCPFAGVGCSFKGSPQSVQEHEVTSQTSHLNLLL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQEELALQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQEELALQH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 FMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 FMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 QTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 YGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 YGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAID 310 320 330 340 350 360 370 380 390 400 410 pF1KE1 AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETST :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 AFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETST 370 380 390 400 410 >>NP_001177876 (OMIM: 601711) TNF receptor-associated fa (294 aa) initn: 1936 init1: 1936 opt: 1936 Z-score: 1773.6 bits: 336.7 E(85289): 4.7e-92 Smith-Waterman score: 1936; 100.0% identity (100.0% similar) in 294 aa overlap (123-416:1-294) 100 110 120 130 140 150 pF1KE1 VGCSFKGSPQSVQEHEVTSQTSHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQA :::::::::::::::::::::::::::::: NP_001 MKQWKARLGCGLESGPMALEQNLSDLQLQA 10 20 30 160 170 180 190 200 210 pF1KE1 AVEVAGDLEVDCYRAPCSESQEELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AVEVAGDLEVDCYRAPCSESQEELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASH 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE1 LALATSIHQSQLDRERILSLEQRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LALATSIHQSQLDRERILSLEQRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWK 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE1 ITNVTRRCHESACGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ITNVTRRCHESACGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGE 160 170 180 190 200 210 340 350 360 370 380 390 pF1KE1 YDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSK 220 230 240 250 260 270 400 410 pF1KE1 LQSPKHAYVKDDTMFLKCIVETST :::::::::::::::::::::::: NP_001 LQSPKHAYVKDDTMFLKCIVETST 280 290 >>XP_011517277 (OMIM: 601895) PREDICTED: TNF receptor-as (501 aa) initn: 932 init1: 809 opt: 879 Z-score: 809.3 bits: 159.0 E(85289): 2.4e-38 Smith-Waterman score: 908; 42.3% identity (65.1% similar) in 392 aa overlap (34-415:159-499) 10 20 30 40 50 pF1KE1 SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGED-----QICPKCR :.: : : . : : : ..::: XP_011 CPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHC--RAPCCGADVKAHHEVCPKF- 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE1 GEDLQSISPGSRLRTQEKAHPEVAEAG---IGCPFAGVGC--SFKGSPQSVQEHEVTSQT : . :.. .:: . .: : . : : ..:: . .: : ::::: XP_011 --PLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQ--QEHEVQWLR 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE1 SHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQ :: .::. . ::. :. :.: : .:. : : : :: XP_011 EHLAMLLSSV----------LEAKPL-----LGD-QSHAGSE----LLQRC------ES- 250 260 270 180 190 200 210 220 230 pF1KE1 EELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE :: : .::::: :::.::: .. . .: .::...: .: XP_011 ----------------LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALS 280 290 300 310 240 250 260 270 280 290 pF1KE1 QRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFS ..: .:..... :: :.. :::.. :: ...::.:.:::.. .:. .:.. :: ..:: XP_011 SKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFS 320 330 340 350 360 370 300 310 320 330 340 350 pF1KE1 PAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQN :::::..::::.:::.::::::::. ::::::.:.:.: :::: ::: .:::.:::::: XP_011 PAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN 380 390 400 410 420 430 360 370 380 390 400 410 pF1KE1 NREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE ::::.:::::::..:.::::: .. :.::::::: :.::... :..::.::..:.: ::. XP_011 NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVD 440 450 460 470 480 490 pF1KE1 TST . XP_011 LTGL 500 >>XP_011517278 (OMIM: 601895) PREDICTED: TNF receptor-as (501 aa) initn: 932 init1: 809 opt: 879 Z-score: 809.3 bits: 159.0 E(85289): 2.4e-38 Smith-Waterman score: 908; 42.3% identity (65.1% similar) in 392 aa overlap (34-415:159-499) 10 20 30 40 50 pF1KE1 SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGED-----QICPKCR :.: : : . : : : ..::: XP_011 CPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHC--RAPCCGADVKAHHEVCPKF- 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE1 GEDLQSISPGSRLRTQEKAHPEVAEAG---IGCPFAGVGC--SFKGSPQSVQEHEVTSQT : . :.. .:: . .: : . : : ..:: . .: : ::::: XP_011 --PLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQ--QEHEVQWLR 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE1 SHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQ :: .::. . ::. :. :.: : .:. : : : :: XP_011 EHLAMLLSSV----------LEAKPL-----LGD-QSHAGSE----LLQRC------ES- 250 260 270 180 190 200 210 220 230 pF1KE1 EELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE :: : .::::: :::.::: .. . .: .::...: .: XP_011 ----------------LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALS 280 290 300 310 240 250 260 270 280 290 pF1KE1 QRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFS ..: .:..... :: :.. :::.. :: ...::.:.:::.. .:. .:.. :: ..:: XP_011 SKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFS 320 330 340 350 360 370 300 310 320 330 340 350 pF1KE1 PAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQN :::::..::::.:::.::::::::. ::::::.:.:.: :::: ::: .:::.:::::: XP_011 PAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN 380 390 400 410 420 430 360 370 380 390 400 410 pF1KE1 NREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE ::::.:::::::..:.::::: .. :.::::::: :.::... :..::.::..:.: ::. XP_011 NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVD 440 450 460 470 480 490 pF1KE1 TST . XP_011 LTGL 500 >>XP_011517279 (OMIM: 601895) PREDICTED: TNF receptor-as (501 aa) initn: 932 init1: 809 opt: 879 Z-score: 809.3 bits: 159.0 E(85289): 2.4e-38 Smith-Waterman score: 908; 42.3% identity (65.1% similar) in 392 aa overlap (34-415:159-499) 10 20 30 40 50 pF1KE1 SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGED-----QICPKCR :.: : : . : : : ..::: XP_011 CPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHC--RAPCCGADVKAHHEVCPKF- 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE1 GEDLQSISPGSRLRTQEKAHPEVAEAG---IGCPFAGVGC--SFKGSPQSVQEHEVTSQT : . :.. .:: . .: : . : : ..:: . .: : ::::: XP_011 --PLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQ--QEHEVQWLR 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE1 SHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQ :: .::. . ::. :. :.: : .:. : : : :: XP_011 EHLAMLLSSV----------LEAKPL-----LGD-QSHAGSE----LLQRC------ES- 250 260 270 180 190 200 210 220 230 pF1KE1 EELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE :: : .::::: :::.::: .. . .: .::...: .: XP_011 ----------------LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALS 280 290 300 310 240 250 260 270 280 290 pF1KE1 QRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFS ..: .:..... :: :.. :::.. :: ...::.:.:::.. .:. .:.. :: ..:: XP_011 SKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFS 320 330 340 350 360 370 300 310 320 330 340 350 pF1KE1 PAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQN :::::..::::.:::.::::::::. ::::::.:.:.: :::: ::: .:::.:::::: XP_011 PAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN 380 390 400 410 420 430 360 370 380 390 400 410 pF1KE1 NREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE ::::.:::::::..:.::::: .. :.::::::: :.::... :..::.::..:.: ::. XP_011 NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVD 440 450 460 470 480 490 pF1KE1 TST . XP_011 LTGL 500 >>NP_066961 (OMIM: 601895) TNF receptor-associated facto (501 aa) initn: 932 init1: 809 opt: 879 Z-score: 809.3 bits: 159.0 E(85289): 2.4e-38 Smith-Waterman score: 908; 42.3% identity (65.1% similar) in 392 aa overlap (34-415:159-499) 10 20 30 40 50 pF1KE1 SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGED-----QICPKCR :.: : : . : : : ..::: NP_066 CPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHC--RAPCCGADVKAHHEVCPKF- 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE1 GEDLQSISPGSRLRTQEKAHPEVAEAG---IGCPFAGVGC--SFKGSPQSVQEHEVTSQT : . :.. .:: . .: : . : : ..:: . .: : ::::: NP_066 --PLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQ--QEHEVQWLR 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE1 SHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQ :: .::. . ::. :. :.: : .:. : : : :: NP_066 EHLAMLLSSV----------LEAKPL-----LGD-QSHAGSE----LLQRC------ES- 250 260 270 180 190 200 210 220 230 pF1KE1 EELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE :: : .::::: :::.::: .. . .: .::...: .: NP_066 ----------------LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALS 280 290 300 310 240 250 260 270 280 290 pF1KE1 QRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFS ..: .:..... :: :.. :::.. :: ...::.:.:::.. .:. .:.. :: ..:: NP_066 SKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFS 320 330 340 350 360 370 300 310 320 330 340 350 pF1KE1 PAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQN :::::..::::.:::.::::::::. ::::::.:.:.: :::: ::: .:::.:::::: NP_066 PAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN 380 390 400 410 420 430 360 370 380 390 400 410 pF1KE1 NREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE ::::.:::::::..:.::::: .. :.::::::: :.::... :..::.::..:.: ::. NP_066 NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVD 440 450 460 470 480 490 pF1KE1 TST . NP_066 LTGL 500 >>XP_016870584 (OMIM: 601895) PREDICTED: TNF receptor-as (501 aa) initn: 932 init1: 809 opt: 879 Z-score: 809.3 bits: 159.0 E(85289): 2.4e-38 Smith-Waterman score: 908; 42.3% identity (65.1% similar) in 392 aa overlap (34-415:159-499) 10 20 30 40 50 pF1KE1 SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGED-----QICPKCR :.: : : . : : : ..::: XP_016 CPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHC--RAPCCGADVKAHHEVCPKF- 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE1 GEDLQSISPGSRLRTQEKAHPEVAEAG---IGCPFAGVGC--SFKGSPQSVQEHEVTSQT : . :.. .:: . .: : . : : ..:: . .: : ::::: XP_016 --PLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQ--QEHEVQWLR 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE1 SHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQ :: .::. . ::. :. :.: : .:. : : : :: XP_016 EHLAMLLSSV----------LEAKPL-----LGD-QSHAGSE----LLQRC------ES- 250 260 270 180 190 200 210 220 230 pF1KE1 EELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE :: : .::::: :::.::: .. . .: .::...: .: XP_016 ----------------LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALS 280 290 300 310 240 250 260 270 280 290 pF1KE1 QRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFS ..: .:..... :: :.. :::.. :: ...::.:.:::.. .:. .:.. :: ..:: XP_016 SKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFS 320 330 340 350 360 370 300 310 320 330 340 350 pF1KE1 PAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQN :::::..::::.:::.::::::::. ::::::.:.:.: :::: ::: .:::.:::::: XP_016 PAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN 380 390 400 410 420 430 360 370 380 390 400 410 pF1KE1 NREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE ::::.:::::::..:.::::: .. :.::::::: :.::... :..::.::..:.: ::. XP_016 NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVD 440 450 460 470 480 490 pF1KE1 TST . XP_016 LTGL 500 >>XP_011517276 (OMIM: 601895) PREDICTED: TNF receptor-as (501 aa) initn: 932 init1: 809 opt: 879 Z-score: 809.3 bits: 159.0 E(85289): 2.4e-38 Smith-Waterman score: 908; 42.3% identity (65.1% similar) in 392 aa overlap (34-415:159-499) 10 20 30 40 50 pF1KE1 SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGED-----QICPKCR :.: : : . : : : ..::: XP_011 CPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHC--RAPCCGADVKAHHEVCPKF- 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE1 GEDLQSISPGSRLRTQEKAHPEVAEAG---IGCPFAGVGC--SFKGSPQSVQEHEVTSQT : . :.. .:: . .: : . : : ..:: . .: : ::::: XP_011 --PLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQ--QEHEVQWLR 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE1 SHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQ :: .::. . ::. :. :.: : .:. : : : :: XP_011 EHLAMLLSSV----------LEAKPL-----LGD-QSHAGSE----LLQRC------ES- 250 260 270 180 190 200 210 220 230 pF1KE1 EELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE :: : .::::: :::.::: .. . .: .::...: .: XP_011 ----------------LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALS 280 290 300 310 240 250 260 270 280 290 pF1KE1 QRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFS ..: .:..... :: :.. :::.. :: ...::.:.:::.. .:. .:.. :: ..:: XP_011 SKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFS 320 330 340 350 360 370 300 310 320 330 340 350 pF1KE1 PAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQN :::::..::::.:::.::::::::. ::::::.:.:.: :::: ::: .:::.:::::: XP_011 PAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN 380 390 400 410 420 430 360 370 380 390 400 410 pF1KE1 NREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE ::::.:::::::..:.::::: .. :.::::::: :.::... :..::.::..:.: ::. XP_011 NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVD 440 450 460 470 480 490 pF1KE1 TST . XP_011 LTGL 500 >>XP_011517280 (OMIM: 601895) PREDICTED: TNF receptor-as (501 aa) initn: 932 init1: 809 opt: 879 Z-score: 809.3 bits: 159.0 E(85289): 2.4e-38 Smith-Waterman score: 908; 42.3% identity (65.1% similar) in 392 aa overlap (34-415:159-499) 10 20 30 40 50 pF1KE1 SSGSSPRPAPDENEFPFGCPPTVCQDPKEPRALCCAGCLSENPRNGED-----QICPKCR :.: : : . : : : ..::: XP_011 CPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHC--RAPCCGADVKAHHEVCPKF- 130 140 150 160 170 180 60 70 80 90 100 110 pF1KE1 GEDLQSISPGSRLRTQEKAHPEVAEAG---IGCPFAGVGC--SFKGSPQSVQEHEVTSQT : . :.. .:: . .: : . : : ..:: . .: : ::::: XP_011 --PLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQ--QEHEVQWLR 190 200 210 220 230 240 120 130 140 150 160 170 pF1KE1 SHLNLLLGFMKQWKARLGCGLESGPMALEQNLSDLQLQAAVEVAGDLEVDCYRAPCSESQ :: .::. . ::. :. :.: : .:. : : : :: XP_011 EHLAMLLSSV----------LEAKPL-----LGD-QSHAGSE----LLQRC------ES- 250 260 270 180 190 200 210 220 230 pF1KE1 EELALQHFMKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLE :: : .::::: :::.::: .. . .: .::...: .: XP_011 ----------------LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALS 280 290 300 310 240 250 260 270 280 290 pF1KE1 QRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFS ..: .:..... :: :.. :::.. :: ...::.:.:::.. .:. .:.. :: ..:: XP_011 SKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFS 320 330 340 350 360 370 300 310 320 330 340 350 pF1KE1 PAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQN :::::..::::.:::.::::::::. ::::::.:.:.: :::: ::: .:::.:::::: XP_011 PAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN 380 390 400 410 420 430 360 370 380 390 400 410 pF1KE1 NREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVE ::::.:::::::..:.::::: .. :.::::::: :.::... :..::.::..:.: ::. XP_011 NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVD 440 450 460 470 480 490 pF1KE1 TST . XP_011 LTGL 500 416 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:31:57 2016 done: Sun Nov 6 21:31:58 2016 Total Scan time: 9.060 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]