FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1738, 244 aa 1>>>pF1KE1738 244 - 244 aa - 244 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2426+/-0.000342; mu= 20.3043+/- 0.021 mean_var=55.0669+/-11.488, 0's: 0 Z-trim(114.6): 43 B-trim: 770 in 1/49 Lambda= 0.172834 statistics sampled from 24472 (24516) to 24472 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.287), width: 16 Scan time: 6.610 The best scores are: opt bits E(85289) NP_000130 (OMIM: 147050,147138) high affinity immu ( 244) 1573 399.8 2.2e-111 XP_011543152 (OMIM: 147050,147138) PREDICTED: high ( 244) 1573 399.8 2.2e-111 XP_005273903 (OMIM: 147050,147138) PREDICTED: high ( 251) 1573 399.8 2.2e-111 XP_016872851 (OMIM: 147050,147138) PREDICTED: high ( 204) 1158 296.3 2.7e-80 NP_001243845 (OMIM: 147050,147138) high affinity i ( 199) 864 223.0 3.1e-58 NP_076926 (OMIM: 606547) membrane-spanning 4-domai ( 220) 257 71.7 1.2e-12 XP_016873398 (OMIM: 606547) PREDICTED: membrane-sp ( 220) 257 71.7 1.2e-12 NP_683876 (OMIM: 606547) membrane-spanning 4-domai ( 239) 257 71.7 1.3e-12 NP_006129 (OMIM: 606498) membrane-spanning 4-domai ( 214) 250 69.9 4e-12 NP_060186 (OMIM: 606550) membrane-spanning 4-domai ( 267) 239 67.2 3.2e-11 XP_011543419 (OMIM: 606550) PREDICTED: membrane-sp ( 267) 239 67.2 3.2e-11 NP_113645 (OMIM: 606549) membrane-spanning 4-domai ( 250) 214 61.0 2.3e-09 XP_011543665 (OMIM: 606498) PREDICTED: membrane-sp ( 154) 205 58.6 7.6e-09 NP_067024 (OMIM: 606502) membrane-spanning 4-domai ( 240) 186 54.0 2.8e-07 NP_996822 (OMIM: 606502) membrane-spanning 4-domai ( 240) 186 54.0 2.8e-07 NP_076434 (OMIM: 606499) membrane-spanning 4-domai ( 200) 183 53.2 4.1e-07 NP_001234928 (OMIM: 606548) membrane-spanning 4-do ( 253) 173 50.8 2.8e-06 XP_005274234 (OMIM: 606548) PREDICTED: membrane-sp ( 276) 173 50.8 2.9e-06 NP_001317204 (OMIM: 606548) membrane-spanning 4-do ( 276) 173 50.8 2.9e-06 NP_690590 (OMIM: 606548) membrane-spanning 4-domai ( 178) 168 49.4 5e-06 NP_071744 (OMIM: 606548) membrane-spanning 4-domai ( 225) 168 49.5 6e-06 NP_690591 (OMIM: 606548) membrane-spanning 4-domai ( 248) 168 49.5 6.4e-06 NP_996776 (OMIM: 608403) membrane-spanning 4-domai ( 267) 151 45.3 0.00013 XP_011543291 (OMIM: 608403) PREDICTED: membrane-sp ( 290) 151 45.3 0.00014 NP_001230195 (OMIM: 606547) membrane-spanning 4-do ( 186) 149 44.7 0.00014 XP_016873614 (OMIM: 606548) PREDICTED: membrane-sp ( 145) 142 42.8 0.00039 XP_011543511 (OMIM: 606548) PREDICTED: membrane-sp ( 148) 142 42.8 0.00039 NP_690605 (OMIM: 112210,613495) B-lymphocyte antig ( 297) 136 41.6 0.0019 NP_068769 (OMIM: 112210,613495) B-lymphocyte antig ( 297) 136 41.6 0.0019 >>NP_000130 (OMIM: 147050,147138) high affinity immunogl (244 aa) initn: 1573 init1: 1573 opt: 1573 Z-score: 2120.7 bits: 399.8 E(85289): 2.2e-111 Smith-Waterman score: 1573; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE1 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISER 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 RNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 IVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 IVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSP 190 200 210 220 230 240 pF1KE1 PIDL :::: NP_000 PIDL >>XP_011543152 (OMIM: 147050,147138) PREDICTED: high aff (244 aa) initn: 1573 init1: 1573 opt: 1573 Z-score: 2120.7 bits: 399.8 E(85289): 2.2e-111 Smith-Waterman score: 1573; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE1 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISER 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 IVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSP 190 200 210 220 230 240 pF1KE1 PIDL :::: XP_011 PIDL >>XP_005273903 (OMIM: 147050,147138) PREDICTED: high aff (251 aa) initn: 1573 init1: 1573 opt: 1573 Z-score: 2120.5 bits: 399.8 E(85289): 2.2e-111 Smith-Waterman score: 1573; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:8-251) 10 20 30 40 50 pF1KE1 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTV ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSSVNEKMDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LKKEQEFLGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LKKEQEFLGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGM 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LSIISERRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LSIISERRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCF 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 MASFSTEIVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MASFSTEIVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELE 190 200 210 220 230 240 240 pF1KE1 DPGEMSPPIDL ::::::::::: XP_005 DPGEMSPPIDL 250 >>XP_016872851 (OMIM: 147050,147138) PREDICTED: high aff (204 aa) initn: 1158 init1: 1158 opt: 1158 Z-score: 1562.5 bits: 296.3 E(85289): 2.7e-80 Smith-Waterman score: 1158; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:8-186) 10 20 30 40 50 pF1KE1 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTV ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSSVNEKMDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LKKEQEFLGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKKEQEFLGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGM 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LSIISERRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSIISERRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCF 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 MASFSTEIVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELE :::::: XP_016 MASFSTVCIFFCVGRLRFWVLMKL 190 200 >>NP_001243845 (OMIM: 147050,147138) high affinity immun (199 aa) initn: 880 init1: 864 opt: 864 Z-score: 1166.4 bits: 223.0 E(85289): 3.1e-58 Smith-Waterman score: 1162; 81.6% identity (81.6% similar) in 244 aa overlap (1-244:1-199) 10 20 30 40 50 60 pF1KE1 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LGVTQILTAMICLCFGTVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISER :: ::::::::::::: NP_001 LG---------------------------------------------FSISGMLSIISER 70 130 140 150 160 170 180 pF1KE1 RNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTE 80 90 100 110 120 130 190 200 210 220 230 240 pF1KE1 IVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IVVMMLFLTILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSP 140 150 160 170 180 190 pF1KE1 PIDL :::: NP_001 PIDL >>NP_076926 (OMIM: 606547) membrane-spanning 4-domains s (220 aa) initn: 217 init1: 156 opt: 257 Z-score: 347.9 bits: 71.7 E(85289): 1.2e-12 Smith-Waterman score: 257; 37.0% identity (62.4% similar) in 165 aa overlap (48-203:30-187) 20 30 40 50 60 70 pF1KE1 SSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTV----LKKEQEFLGVTQILTAMICL : : . :: : . :::.:::::.. : NP_076 MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSL 10 20 30 40 50 80 90 100 110 120 130 pF1KE1 CFG-TVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISERRNATYLVRGSLG .: :..: . :. :. : :: .::...: ::: ::: . :.. ::::::: NP_076 SMGITMMCMA---SNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLG 60 70 80 90 100 110 140 150 160 170 180 pF1KE1 ANTASSIAGGTGITILIINLKKSLAYIHIHS--CQKFFETKCFMASFSTEIVV--MMLFL : .::. ...:: .:: :::. .: :. . ... ...: . . :.:.: NP_076 MNITSSVLAASGI---LINTF-SLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 TILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSPPIDL ..: . ::::. : NP_076 SVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 180 190 200 210 220 >>XP_016873398 (OMIM: 606547) PREDICTED: membrane-spanni (220 aa) initn: 217 init1: 156 opt: 257 Z-score: 347.9 bits: 71.7 E(85289): 1.2e-12 Smith-Waterman score: 257; 37.0% identity (62.4% similar) in 165 aa overlap (48-203:30-187) 20 30 40 50 60 70 pF1KE1 SSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTV----LKKEQEFLGVTQILTAMICL : : . :: : . :::.:::::.. : XP_016 MTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSL 10 20 30 40 50 80 90 100 110 120 130 pF1KE1 CFG-TVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISERRNATYLVRGSLG .: :..: . :. :. : :: .::...: ::: ::: . :.. ::::::: XP_016 SMGITMMCMA---SNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLG 60 70 80 90 100 110 140 150 160 170 180 pF1KE1 ANTASSIAGGTGITILIINLKKSLAYIHIHS--CQKFFETKCFMASFSTEIVV--MMLFL : .::. ...:: .:: :::. .: :. . ... ...: . . :.:.: XP_016 MNITSSVLAASGI---LINTF-SLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE1 TILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSPPIDL ..: . ::::. : XP_016 SVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 180 190 200 210 220 >>NP_683876 (OMIM: 606547) membrane-spanning 4-domains s (239 aa) initn: 217 init1: 156 opt: 257 Z-score: 347.4 bits: 71.7 E(85289): 1.3e-12 Smith-Waterman score: 257; 37.0% identity (62.4% similar) in 165 aa overlap (48-203:49-206) 20 30 40 50 60 70 pF1KE1 SSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTV----LKKEQEFLGVTQILTAMICL : : . :: : . :::.:::::.. : NP_683 AMTTMQGMEQAMPGAGPGVPQLGNMAVIHSHLWKGLQEKFLKGEPKVLGVVQILTALMSL 20 30 40 50 60 70 80 90 100 110 120 130 pF1KE1 CFG-TVVCSVLDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISERRNATYLVRGSLG .: :..: . :. :. : :: .::...: ::: ::: . :.. ::::::: NP_683 SMGITMMCMA---SNTYGSNPISVYIGYTIWGSVMFIISGSLSIAAGIRTTKGLVRGSLG 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ANTASSIAGGTGITILIINLKKSLAYIHIHS--CQKFFETKCFMASFSTEIVV--MMLFL : .::. ...:: .:: :::. .: :. . ... ...: . . :.:.: NP_683 MNITSSVLAASGI---LINTF-SLAFYSFHHPYCNYYGNSNNCHGTMSILMGLDGMVLLL 140 150 160 170 180 190 190 200 210 220 230 240 pF1KE1 TILGLGSAVSLTICGAGEELKGNKVPEDRVYEELNIYSATYSELEDPGEMSPPIDL ..: . ::::. : NP_683 SVLEFCIAVSLSAFGCKVLCCTPGGVVLILPSHSHMAETASPTPLNEV 200 210 220 230 >>NP_006129 (OMIM: 606498) membrane-spanning 4-domains s (214 aa) initn: 187 init1: 152 opt: 250 Z-score: 338.6 bits: 69.9 E(85289): 4e-12 Smith-Waterman score: 250; 29.3% identity (61.4% similar) in 184 aa overlap (27-204:23-198) 10 20 30 40 50 60 pF1KE1 MDTESNRRANLALPQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEF : .:.:.... .:: . : . . NP_006 MASHEVDNAELGSASAHGTPGSEAGPEELNTSVYQPIDGSPDYQ------KAKLQV 10 20 30 40 50 70 80 90 100 110 pF1KE1 LGVTQILTAMICLCFGTVVCSVLDISHIEGDIFS-SFKAGYPFWGAIFFSISGMLSIISE ::. :::.: . : .:. . :. :.. .: .: .:::.:::.:: :: ::... NP_006 LGAIQILNAAMILALGVFLGSLQYPYHFQKHFFFFTFYTGYPIWGAVFFCSSGTLSVVAG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 RRNATYLVRGSLGANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETK--C-FMAS . . ...:.: : ::. . .: ..: .:. .. ..::.. :. : .:.: NP_006 IKPTRTWIQNSFGMNIASATIALVGTAFLSLNIAVNIQ--SLRSCHSSSESPDLCNYMGS 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 FSTEIVVMMLFLTILGLGSAVSLTI--CGAGEELKGNKVPEDRVYEELNIYSATYSELED .:. .: ..:.::.: : ..: :.: NP_006 ISNGMVSLLLILTLLELCVTISTIAMWCNANCCNSREEISSPPNSV 170 180 190 200 210 >>NP_060186 (OMIM: 606550) membrane-spanning 4-domains s (267 aa) initn: 197 init1: 143 opt: 239 Z-score: 322.5 bits: 67.2 E(85289): 3.2e-11 Smith-Waterman score: 239; 34.5% identity (69.1% similar) in 110 aa overlap (44-152:74-183) 20 30 40 50 60 70 pF1KE1 PQEPSSVPAFEVLEISPQEVSSGRLLKSASSPPLHTWLTVLKKEQEFLGVTQILTAMICL .: . : . .:.: . ::: ::..... . NP_060 QGAQRAQPYGITSPGIFASSQPGQGNIQMINPSVGTAVMNFKEEAKALGVIQIMVGLMHI 50 60 70 80 90 100 80 90 100 110 120 130 pF1KE1 CFGTVVCSV-LDISHIEGDIFSSFKAGYPFWGAIFFSISGMLSIISERRNATYLVRGSLG :: :.: . ... .. : .. .::::::.. : ::: ::. . .. . ::.:::: NP_060 GFGIVLCLISFSFREVLGFASTAVIGGYPFWGGLSFIISGSLSVSASKELSRCLVKGSLG 110 120 130 140 150 160 140 150 160 170 180 190 pF1KE1 ANTASSIAGGTGITILIINLKKSLAYIHIHSCQKFFETKCFMASFSTEIVVMMLFLTILG : .::: . :. .:.... NP_060 MNIVSSILAFIGVILLLVDMCINGVAGQDYWAVLSGKGISATLMIFSLLEFFVACATAHF 170 180 190 200 210 220 244 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:33:10 2016 done: Sun Nov 6 21:33:11 2016 Total Scan time: 6.610 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]