FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1204, 115 aa
  1>>>pF1KE1204 115 - 115 aa - 115 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1928+/-0.000288; mu= 10.7856+/- 0.018
 mean_var=56.5002+/-11.065, 0's: 0 Z-trim(117.4): 16  B-trim: 0 in 0/52
 Lambda= 0.170628
 statistics sampled from 29332 (29343) to 29332 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.344), width:  16
 Scan time:  4.540

The best scores are:                                      opt bits E(85289)
NP_001106678 (OMIM: 616041) thiosulfate sulfurtran ( 115)  739 189.3 1.2e-48
NP_001106676 (OMIM: 616041) thiosulfate sulfurtran ( 109)  630 162.4 1.4e-40
NP_001106677 (OMIM: 616041) thiosulfate sulfurtran (  74)  464 121.5 1.9e-28


>>NP_001106678 (OMIM: 616041) thiosulfate sulfurtransfer  (115 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 994.3  bits: 189.3 E(85289): 1.2e-48
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE1 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE1 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
               70        80        90       100       110     

>>NP_001106676 (OMIM: 616041) thiosulfate sulfurtransfer  (109 aa)
 initn: 630 init1: 630 opt: 630  Z-score: 849.7  bits: 162.4 E(85289): 1.4e-40
Smith-Waterman score: 630; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KE1 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE1 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
       :::::::::::::::::::::::::::::::::::::::                
NP_001 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGYGEVWLLAGR      
               70        80        90       100               

>>NP_001106677 (OMIM: 616041) thiosulfate sulfurtransfer  (74 aa)
 initn: 464 init1: 464 opt: 464  Z-score: 631.5  bits: 121.5 E(85289): 1.9e-28
Smith-Waterman score: 464; 100.0% identity (100.0% similar) in 71 aa overlap (45-115:4-74)

           20        30        40        50        60        70    
pF1KE1 LLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQALYSAEKPKLEDEH
                                     ::::::::::::::::::::::::::::::
NP_001                            MAGVSELESALQMEPAAFQALYSAEKPKLEDEH
                                          10        20        30   

           80        90       100       110     
pF1KE1 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
       :::::::::::::::::::::::::::::::::::::::::
NP_001 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES
            40        50        60        70    




115 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:36:01 2016 done: Sun Nov  6 21:36:02 2016
 Total Scan time:  4.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]