FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1204, 115 aa 1>>>pF1KE1204 115 - 115 aa - 115 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2721+/-0.000582; mu= 10.2001+/- 0.035 mean_var=54.9353+/-10.892, 0's: 0 Z-trim(111.0): 10 B-trim: 54 in 1/49 Lambda= 0.173041 statistics sampled from 12055 (12064) to 12055 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.371), width: 16 Scan time: 1.600 The best scores are: opt bits E(32554) CCDS53400.1 TSTD1 gene_id:100131187|Hs108|chr1 ( 115) 739 191.7 8.7e-50 CCDS44258.1 TSTD1 gene_id:100131187|Hs108|chr1 ( 109) 630 164.4 1.3e-41 CCDS44257.1 TSTD1 gene_id:100131187|Hs108|chr1 ( 74) 464 122.9 2.7e-29 >>CCDS53400.1 TSTD1 gene_id:100131187|Hs108|chr1 (115 aa) initn: 739 init1: 739 opt: 739 Z-score: 1007.3 bits: 191.7 E(32554): 8.7e-50 Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115) 10 20 30 40 50 60 pF1KE1 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES 70 80 90 100 110 >>CCDS44258.1 TSTD1 gene_id:100131187|Hs108|chr1 (109 aa) initn: 630 init1: 630 opt: 630 Z-score: 860.6 bits: 164.4 E(32554): 1.3e-41 Smith-Waterman score: 630; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99) 10 20 30 40 50 60 pF1KE1 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES ::::::::::::::::::::::::::::::::::::::: CCDS44 ALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGYGEVWLLAGR 70 80 90 100 >>CCDS44257.1 TSTD1 gene_id:100131187|Hs108|chr1 (74 aa) initn: 464 init1: 464 opt: 464 Z-score: 639.4 bits: 122.9 E(32554): 2.7e-29 Smith-Waterman score: 464; 100.0% identity (100.0% similar) in 71 aa overlap (45-115:4-74) 20 30 40 50 60 70 pF1KE1 LLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQALYSAEKPKLEDEH :::::::::::::::::::::::::::::: CCDS44 MAGVSELESALQMEPAAFQALYSAEKPKLEDEH 10 20 30 80 90 100 110 pF1KE1 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES ::::::::::::::::::::::::::::::::::::::::: CCDS44 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES 40 50 60 70 115 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:36:01 2016 done: Sun Nov 6 21:36:01 2016 Total Scan time: 1.600 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]