FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1588, 102 aa 1>>>pF1KE1588 102 - 102 aa - 102 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3869+/-0.000232; mu= 5.6253+/- 0.015 mean_var=97.0950+/-19.212, 0's: 0 Z-trim(125.8): 2 B-trim: 453 in 1/52 Lambda= 0.130159 statistics sampled from 50184 (50191) to 50184 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.879), E-opt: 0.2 (0.588), width: 16 Scan time: 3.890 The best scores are: opt bits E(85289) NP_004385 (OMIM: 600954) death-associated protein ( 102) 724 144.3 3.2e-35 NP_001278892 (OMIM: 600954) death-associated prote ( 204) 361 76.3 1.9e-14 >>NP_004385 (OMIM: 600954) death-associated protein 1 is (102 aa) initn: 724 init1: 724 opt: 724 Z-score: 753.2 bits: 144.3 E(85289): 3.2e-35 Smith-Waterman score: 724; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102) 10 20 30 40 50 60 pF1KE1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFIS 10 20 30 40 50 60 70 80 90 100 pF1KE1 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK :::::::::::::::::::::::::::::::::::::::::: NP_004 GVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK 70 80 90 100 >>NP_001278892 (OMIM: 600954) death-associated protein 1 (204 aa) initn: 386 init1: 355 opt: 361 Z-score: 380.3 bits: 76.3 E(85289): 1.9e-14 Smith-Waterman score: 361; 59.4% identity (74.3% similar) in 101 aa overlap (1-100:1-95) 10 20 30 40 50 pF1KE1 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVF-I :::::::::::::::::::::::::::::::::::::::::::::::::: : . . NP_001 MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPRVTKISPRRL 10 20 30 40 50 60 60 70 80 90 100 pF1KE1 SGVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK ..:. .:: .. . :.: .: .. : ..:: NP_001 RRWLTRS--RMPPWTS-ILPQEPSTSSSHASEP---GVHQPAPWPRLCCTWYFPDRENQQ 70 80 90 100 110 NP_001 FRPNPTLLGNLRQNQVLCPLPYISIFKTRNSSSPNLVYGESGWMSFEDHCAPRGAISRIC 120 130 140 150 160 170 102 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:40:11 2016 done: Sun Nov 6 21:40:12 2016 Total Scan time: 3.890 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]