Result of FASTA (ccds) for
pFN21AE2019
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2019, 596 aa
1>>>pF1KE2019 596 - 596 aa - 596 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0777+/-0.000893; mu= 21.2962+/- 0.054
mean_var=84.0143+/-16.621, 0's: 0 Z-trim(106.5): 35 B-trim: 38 in 1/51
Lambda= 0.139926
statistics sampled from 9138 (9158) to 9138 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.274), width: 16
Scan time: 1.530
The best scores are: opt bits E(33420)
CCDS55262.1 PDP1 gene_id:54704|Hs109|chr8 ( 562) 3818 781.0 0
CCDS6259.1 PDP1 gene_id:54704|Hs109|chr8 ( 537) 3637 744.4 8.5e-215
CCDS10822.1 PDP2 gene_id:57546|Hs109|chr16 ( 529) 1715 356.4 5.3e-98
>>CCDS55262.1 PDP1 gene_id:54704|Hs109|chr8 (562 aa)
initn: 3818 init1: 3818 opt: 3818 Z-score: 4167.2 bits: 781.0 E(33420): 0
Smith-Waterman score: 3818; 100.0% identity (100.0% similar) in 562 aa overlap (35-596:1-562)
10 20 30 40 50 60
pF1KE2 ALLSMGRCCCRCCCPRGLWMLSAPCCDDRRMCVCPGPRRIGIPVRSSSLPLFSDAMPAPT
::::::::::::::::::::::::::::::
CCDS55 MCVCPGPRRIGIPVRSSSLPLFSDAMPAPT
10 20 30
70 80 90 100 110 120
pF1KE2 QLFFPLIRNCELSRIYGTACYCHHKHLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QLFFPLIRNCELSRIYGTACYCHHKHLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE2 TQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIED
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE2 RRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRA
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE2 LLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESTDIDVKEALINAFKRLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESTDIDVKEALINAFKRLDN
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE2 DISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSW
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE2 SAVTLSNDHNAQNERELERLKLEHPKSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SAVTLSNDHNAQNERELERLKLEHPKSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQ
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE2 KRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMH
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE2 RQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRH
460 470 480 490 500 510
550 560 570 580 590
pF1KE2 AVGNNEFGTVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQNQE
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVGNNEFGTVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQNQE
520 530 540 550 560
>>CCDS6259.1 PDP1 gene_id:54704|Hs109|chr8 (537 aa)
initn: 3637 init1: 3637 opt: 3637 Z-score: 3970.0 bits: 744.4 E(33420): 8.5e-215
Smith-Waterman score: 3637; 100.0% identity (100.0% similar) in 537 aa overlap (60-596:1-537)
30 40 50 60 70 80
pF1KE2 CDDRRMCVCPGPRRIGIPVRSSSLPLFSDAMPAPTQLFFPLIRNCELSRIYGTACYCHHK
::::::::::::::::::::::::::::::
CCDS62 MPAPTQLFFPLIRNCELSRIYGTACYCHHK
10 20 30
90 100 110 120 130 140
pF1KE2 HLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQYTQGRRYASTPQKFYLTPPQVNSILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 HLCCSSSYIPQSRLRYTPHPAYATFCRPKENWWQYTQGRRYASTPQKFYLTPPQVNSILK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE2 ANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ANEYSFKVPEFDGKNVSSILGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCA
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE2 CSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 CSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFN
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE2 SLRTYWQELIDLNTGESTDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SLRTYWQELIDLNTGESTDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFS
220 230 240 250 260 270
330 340 350 360 370 380
pF1KE2 GATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHP
280 290 300 310 320 330
390 400 410 420 430 440
pF1KE2 KSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KSEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYH
340 350 360 370 380 390
450 460 470 480 490 500
pF1KE2 TPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGG
400 410 420 430 440 450
510 520 530 540 550 560
pF1KE2 YKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRHAVGNNEFGTVDHERLSKMLSLPEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YKVTLGQMHGLLTERRTKMSSVFEDQNAATHLIRHAVGNNEFGTVDHERLSKMLSLPEEL
460 470 480 490 500 510
570 580 590
pF1KE2 ARMYRDDITIIVVQFNSHVVGAYQNQE
:::::::::::::::::::::::::::
CCDS62 ARMYRDDITIIVVQFNSHVVGAYQNQE
520 530
>>CCDS10822.1 PDP2 gene_id:57546|Hs109|chr16 (529 aa)
initn: 1357 init1: 586 opt: 1715 Z-score: 1873.2 bits: 356.4 E(33420): 5.3e-98
Smith-Waterman score: 1715; 54.4% identity (79.9% similar) in 472 aa overlap (126-592:61-525)
100 110 120 130 140 150
pF1KE2 SYIPQSRLRYTPHPAYATFCRPKENWWQYTQGRRYASTPQ---KFYLTPPQVNSILKANE
.. :..:: . .. :.: :.: .:.:.:
CCDS10 VSNRNKLKWRLFSRVPPTLNSSPCGGFTLCKAYRHTSTEEDDFHLQLSPEQINEVLRAGE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE2 YSFKVPEFDGKNVSSILGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQ
. :. ..... .:.: :.:::: ::.:.::::..:.:::: :...:.::::.: ::.:
CCDS10 TTHKILDLESRVPNSVLRFESNQLAANSPVEDRRGVASCLQTNGLMFGIFDGHGGHACAQ
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE2 AVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNSLR
:::::::::.::::. :.:: ..:.:.:: . :::::.: :::.: . :........ ::
CCDS10 AVSERLFYYVAVSLMSHQTLEHMEGAMESMKPLLPILHWLKHPGDSIYKDVTSVHLDHLR
160 170 180 190 200 210
280 290 300 310 320 330
pF1KE2 TYWQELIDLNTGESTDIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGAT
.:::::.::. ....:::. .:.:::.::::: :. . : :.:::::::
CCDS10 VYWQELLDLHM--EMGLSIEEALMYSFQRLDSDISLEIQAPLEDEVTRNLSLQVAFSGAT
220 230 240 250 260
340 350 360 370 380 390
pF1KE2 ACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELERLKLEHPKSE
::.:::::. :::::.:: ::.:::::..: :: . :. :::: :. :: ::: :::.::
CCDS10 ACMAHVDGIHLHVANAGDCRAILGVQEDNGMWSCLPLTRDHNAWNQAELSRLKREHPESE
270 280 290 300 310 320
400 410 420 430 440 450
pF1KE2 AKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPP
.... .:::::.:.: ::::::..::: .::. ..: : . : : .: ::.:.:::
CCDS10 DRTIIMEDRLLGVLIPCRAFGDVQLKWSKELQRSILERGFNTEALNIY-QFTPPHYYTPP
330 340 350 360 370 380
460 470 480 490 500 510
pF1KE2 YLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVR-IVGEYLTGMHHQQPIAVGGYK
:::::::::::::::::::::::.::::. . .:::: .::. . :. .:
CCDS10 YLTAEPEVTYHRLRPQDKFLVLASDGLWDMLSNEDVVRLVVGHLAEADWHKTDLA--QRP
390 400 410 420 430 440
520 530 540 550 560 570
pF1KE2 VTLGQMHGLLTERRTKMSSVFE-DQNAATHLIRHAVGNNEFGTVDHERLSKMLSLPEELA
..:: :..:: .: : :.. : ::::::.:::::.::::.: .. :::. ::.:::.::
CCDS10 ANLGLMQSLLLQR--KASGLHEADQNAATRLIRHAIGNNEYGEMEAERLAAMLTLPEDLA
450 460 470 480 490 500
580 590
pF1KE2 RMYRDDITIIVVQFNSHVVGAYQNQE
::::::::. :: :::. .:::
CCDS10 RMYRDDITVTVVYFNSESIGAYYKGG
510 520
596 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Jul 16 15:42:43 2019 done: Tue Jul 16 15:42:44 2019
Total Scan time: 1.530 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]