FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1222, 245 aa
  1>>>pF1KE1222 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8611+/-0.000894; mu= 7.7825+/- 0.055
 mean_var=288.3096+/-57.571, 0's: 0 Z-trim(116.4): 121  B-trim: 0 in 0/54
 Lambda= 0.075534
 statistics sampled from 16875 (16997) to 16875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.522), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS44445.1 SFTPA1 gene_id:653509|Hs108|chr10      ( 248) 1757 203.6   1e-52
CCDS44444.2 SFTPA1 gene_id:653509|Hs108|chr10      ( 263) 1757 203.6 1.1e-52
CCDS41540.1 SFTPA2 gene_id:729238|Hs108|chr10      ( 248) 1706 198.0 4.9e-51
CCDS7362.1 SFTPD gene_id:6441|Hs108|chr10          ( 375)  520 69.0 5.1e-12
CCDS7247.1 MBL2 gene_id:4153|Hs108|chr10           ( 248)  492 65.7 3.3e-11


>>CCDS44445.1 SFTPA1 gene_id:653509|Hs108|chr10           (248 aa)
 initn: 1757 init1: 1757 opt: 1757  Z-score: 1059.7  bits: 203.6 E(32554): 1e-52
Smith-Waterman score: 1757; 99.6% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE1 MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS44 MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGLKGDPGPPGPM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
              190       200       210       220       230       240

               
pF1KE1 SRLTI   
       :::::   
CCDS44 SRLTICEF
               

>>CCDS44444.2 SFTPA1 gene_id:653509|Hs108|chr10           (263 aa)
 initn: 1757 init1: 1757 opt: 1757  Z-score: 1059.5  bits: 203.6 E(32554): 1.1e-52
Smith-Waterman score: 1757; 99.6% identity (100.0% similar) in 245 aa overlap (1-245:16-260)

                              10        20        30        40     
pF1KE1                MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRD
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MRPCQVPGAATGPRAMWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRD
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KE1 GRDGVKGDPGPPGPMGPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDE
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GRDGLKGDPGPPGPMGPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDE
               70        80        90       100       110       120

         110       120       130       140       150       160     
pF1KE1 ELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVP
              130       140       150       160       170       180

         170       180       190       200       210       220     
pF1KE1 RNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCV
              190       200       210       220       230       240

         230       240        
pF1KE1 EMYTDGQWNDRNCLYSRLTI   
       ::::::::::::::::::::   
CCDS44 EMYTDGQWNDRNCLYSRLTICEF
              250       260   

>>CCDS41540.1 SFTPA2 gene_id:729238|Hs108|chr10           (248 aa)
 initn: 1706 init1: 1706 opt: 1706  Z-score: 1029.7  bits: 198.0 E(32554): 4.9e-51
Smith-Waterman score: 1706; 97.1% identity (98.8% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE1 MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM
       ::::::::.:::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS41 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQ
       ::::: ::::::.:::::::.::: ::::: :::::::::::::::::::::::::::::
CCDS41 GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
              190       200       210       220       230       240

               
pF1KE1 SRLTI   
       :::::   
CCDS41 SRLTICEF
               

>>CCDS7362.1 SFTPD gene_id:6441|Hs108|chr10               (375 aa)
 initn: 663 init1: 221 opt: 520  Z-score: 329.3  bits: 69.0 E(32554): 5.1e-12
Smith-Waterman score: 520; 36.7% identity (60.2% similar) in 226 aa overlap (27-245:147-372)

                   10        20        30        40        50      
pF1KE1     MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGP
                                     ::.::. :. :..:: :  :. :: :. : 
CCDS73 AGREGPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGARGLAGPKGERGVPGERGV
        120       130       140       150       160       170      

         60          70        80        90       100         110  
pF1KE1 PGPMGPPGEMPC--PPGNDGLPGAPGIPGECGEKGEPGERGPPGLP--AHLDEELQATLH
       ::  :  :      : :. :  : ::. :. :  :. : .:  :::  : : ....:   
CCDS73 PGNTGAAGSAGAMGPQGSPGARGPPGLKGDKGIPGDKGAKGESGLPDVASLRQQVEALQG
        180       190       200       210       220       230      

              120       130       140       150       160       170
pF1KE1 DFRH--QILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEE
       . .:    ..    . :  . ..::::.:.. :    :   :  :..:::..: ::.  :
CCDS73 QVQHLQAAFSQYKKVELFPNGQSVGEKIFKTAGFVKPFTEAQLLCTQAGGQLASPRSAAE
        240       250       260       270       280       290      

              180       190       200       210       220          
pF1KE1 NEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRG-KEQCVEMYT
       : :. ..:   :  :....:.. . : : :  :  . :.::  :::   : .:.:::..:
CCDS73 NAALQQLVVAKNEAAFLSMTDSKTEGKFTYPTGESLVYSNWAPGEPNDDGGSEDCVEIFT
        300       310       320       330       340       350      

     230       240        
pF1KE1 DGQWNDRNCLYSRLTI   
       .:.:::: :  .::..   
CCDS73 NGKWNDRACGEKRLVVCEF
        360       370     

>>CCDS7247.1 MBL2 gene_id:4153|Hs108|chr10                (248 aa)
 initn: 447 init1: 179 opt: 492  Z-score: 314.7  bits: 65.7 E(32554): 3.3e-11
Smith-Waterman score: 509; 36.7% identity (62.1% similar) in 256 aa overlap (5-245:8-243)

                  10           20         30          40        50 
pF1KE1    MWLCPLALNLILMAASGA---VCE-VKDVCVGSPGIPG--TPGSHGLPGRDGRDGVK
              :: : : ..::: .   .:: .. .:   :.. .  .:: .:.::.:::::.:
CCDS72 MSLFPSLPLLL-LSMVAASYSETVTCEDAQKTC---PAVIACSSPGINGFPGKDGRDGTK
               10         20        30           40        50      

                   60        70        80        90          100   
pF1KE1 GDPGPPGP-----MGPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPG---LPAHL
       :. : ::      .::::..  ::::   ::  : ::  :.::.:: ..: :   : :  
CCDS72 GEKGEPGQGLRGLQGPPGKLG-PPGN---PGPSGSPGPKGQKGDPG-KSPDGDSSLAASE
         60        70         80           90        100       110 

           110       120       130       140       150       160   
pF1KE1 DEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIA
        . ::. .  ... .  . :          ::.: : .::. .::. ..  :..  . .:
CCDS72 RKALQTEMARIKKWLTFSLGK--------QVGNKFFLTNGEIMTFEKVKALCVKFQASVA
             120       130               140       150       160   

           170       180       190       200       210       220   
pF1KE1 VPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGK-E
       .:::  :: :: ...:.    :..:.:.  . :.:    :. ..:::: .::: . :. :
CCDS72 TPRNAAENGAIQNLIKEE---AFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDE
           170       180          190       200       210       220

            230       240          
pF1KE1 QCVEMYTDGQWNDRNCLYSRLTI     
       .:: .  .:::::  :  :.:..     
CCDS72 DCVLLLKNGQWNDVPCSTSHLAVCEFPI
              230       240        




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:44:06 2016 done: Sun Nov  6 21:44:06 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]