FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1306, 411 aa
  1>>>pF1KE1306 411 - 411 aa - 411 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5210+/-0.000894; mu= 15.4842+/- 0.054
 mean_var=59.3109+/-11.924, 0's: 0 Z-trim(105.6): 12  B-trim: 0 in 0/48
 Lambda= 0.166536
 statistics sampled from 8496 (8503) to 8496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.261), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS10982.1 DPEP1 gene_id:1800|Hs108|chr16         ( 411) 2776 675.4 2.7e-194
CCDS10857.1 DPEP2 gene_id:64174|Hs108|chr16        ( 486) 1225 302.8 4.7e-82
CCDS10856.1 DPEP3 gene_id:64180|Hs108|chr16        ( 513) 1161 287.4 2.1e-77


>>CCDS10982.1 DPEP1 gene_id:1800|Hs108|chr16              (411 aa)
 initn: 2776 init1: 2776 opt: 2776  Z-score: 3601.8  bits: 675.4 E(32554): 2.7e-194
Smith-Waterman score: 2776; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)

               10        20        30        40        50        60
pF1KE1 MWSGWWLWPLVAVCTADFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MWSGWWLWPLVAVCTADFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 LAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 SSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWADNWLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 FGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFEAVEQASNLT
              310       320       330       340       350       360

              370       380       390       400       410 
pF1KE1 QAPEEEPIPLDQLGGSCRTHYGYSSGASSLHRHWGLLLASLAPLVLCLSLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QAPEEEPIPLDQLGGSCRTHYGYSSGASSLHRHWGLLLASLAPLVLCLSLL
              370       380       390       400       410 

>>CCDS10857.1 DPEP2 gene_id:64174|Hs108|chr16             (486 aa)
 initn: 1217 init1: 843 opt: 1225  Z-score: 1586.6  bits: 302.8 E(32554): 4.7e-82
Smith-Waterman score: 1225; 50.7% identity (80.2% similar) in 363 aa overlap (19-379:72-428)

                           10        20        30        40        
pF1KE1             MWSGWWLWPLVAVCTADFFRDEAERIMRDSPVIDGHNDLPWQLLDMFN
                                     ....:. .::: :..:::::::  : ....
CCDS10 ALTTLGAPRAHTMPGTYAPSTTLSSPSTQGLQEQARALMRDFPLVDGHNDLPLVLRQVYQ
              50        60        70        80        90       100 

       50        60        70        80        90       100        
pF1KE1 NRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRM
       . :::  .:: ...  .:.. .:: :.::.::::.:.::.::..::.: ::::.:...::
CCDS10 KGLQD--VNLRNFSYGQTSLDRLRDGLVGAQFWSAYVPCQTQDRDALRLTLEQIDLIRRM
               110       120       130       140       150         

      110       120       130       140       150       160        
pF1KE1 CRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTH
       :  : :  : :::. .. ..    :.: :::::::::.:.::..::..:.::.:::::::
CCDS10 CASYSELEL-VTSAKALNDT---QKLACLIGVEGGHSLDNSLSILRTFYMLGVRYLTLTH
     160        170          180       190       200       210     

      170       180       190       200       210       220        
pF1KE1 SCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSR
       .::::::..    . .   . .::. ::..:: :.::::...::.::: :. . .:..:.
CCDS10 TCNTPWAESSAKGVHSFYNNISGLTDFGEKVVAEMNRLGMMVDLSHVSDAVARRALEVSQ
         220       230       240       250       260       270     

      230       240       250       260       270       280        
pF1KE1 APVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLD
       ::::::::.: .:: : ::::::.:.:.:.. ..:::..  . :.:. .::.: ::::.:
CCDS10 APVIFSHSAARGVCNSARNVPDDILQLLKKNGGVVMVSLSMGVIQCNPSANVSTVADHFD
         280       290       300       310       320       330     

      290       300       310       320       330       340        
pF1KE1 HIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLR
       ::: : :.. .:.:::.::. . :.:::::: :: :: ::: :.:.: :..:.:  ::::
CCDS10 HIKAVIGSKFIGIGGDYDGAGKFPQGLEDVSTYPVLIEELLSRGWSEEELQGVLRGNLLR
         340       350       360       370       380       390     

      350         360       370       380       390       400      
pF1KE1 VFEAVE--QASNLTQAPEEEPIPLDQLGGSCRTHYGYSSGASSLHRHWGLLLASLAPLVL
       ::. ::  :  :  :.: :. .: .::..::..                           
CCDS10 VFRQVEKVQEENKWQSPLEDKFPDEQLSSSCHSDLSRLRQRQSLTSGQELTEIPIHWTAK
         400       410       420       430       440       450     

        410                           
pF1KE1 CLSLL                          
                                      
CCDS10 LPAKWSVSESSPHMAPVLAVVATFPVLILWL
         460       470       480      

>>CCDS10856.1 DPEP3 gene_id:64180|Hs108|chr16             (513 aa)
 initn: 1113 init1: 790 opt: 1161  Z-score: 1503.2  bits: 287.4 E(32554): 2.1e-77
Smith-Waterman score: 1161; 47.7% identity (76.5% similar) in 375 aa overlap (19-391:105-473)

                           10        20        30        40        
pF1KE1             MWSGWWLWPLVAVCTADFFRDEAERIMRDSPVIDGHNDLPWQLLDMFN
                                     .: .:. .::. :..:::::::  : . ..
CCDS10 GSPSLFTTPGVPSALTTPGLTTPGTPKTLDLRGRAQALMRSFPLVDGHNDLPQVLRQRYK
           80        90       100       110       120       130    

       50        60        70        80        90       100        
pF1KE1 NRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRM
       : :::  .:: ...  .:.. .:: :.::.::::. . :..:.. ::: .:::.:..:::
CCDS10 NVLQD--VNLRNFSHGQTSLDRLRDGLVGAQFWSASVSCQSQDQTAVRLALEQIDLIHRM
            140       150       160       170       180       190  

      110       120       130       140       150       160        
pF1KE1 CRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTH
       :  : :  : :::. :. ..    :.: :::::::::.::::.:::..: ::.:::::: 
CCDS10 CASYSELEL-VTSAEGLNSS---QKLACLIGVEGGHSLDSSLSVLRSFYVLGVRYLTLTF
            200        210          220       230       240        

      170       180       190       200       210       220        
pF1KE1 SCNTPWADNWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSR
       .:.::::..          . .::. ::..::.::::::..:::...: . .. .:..:.
CCDS10 TCSTPWAESSTKFRHHMYTNVSGLTSFGEKVVEELNRLGMMIDLSYASDTLIRRVLEVSQ
      250       260       270       280       290       300        

      230       240       250       260       270       280        
pF1KE1 APVIFSHSSAYSVCASRRNVPDDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLD
       ::::::::.: .:: .  :::::.:.:.:.. ..:::..  . ..:.  ::.: ::::.:
CCDS10 APVIFSHSAARAVCDNLLNVPDDILQLLKKNGGIVMVTLSMGVLQCNLLANVSTVADHFD
      310       320       330       340       350       360        

      290       300       310       320       330       340        
pF1KE1 HIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLR
       ::. : :.. .:.::..::. : :.:::::: :: :: ::: :.:.: :..:.:  ::::
CCDS10 HIRAVIGSEFIGIGGNYDGTGRFPQGLEDVSTYPVLIEELLSRSWSEEELQGVLRGNLLR
      370       380       390       400       410       420        

      350       360         370       380       390       400      
pF1KE1 VFEAVEQASNLT--QAPEEEPIPLDQLGGSCRTHYGYSSGASSLHRHWGLLLASLAPLVL
       ::. ::.. . .  :.: :  .:  ::. ::..:   ..: .. :               
CCDS10 VFRQVEKVREESRAQSPVEAEFPYGQLSTSCHSHLVPQNGHQATHLEVTKQPTNRVPWRS
      430       440       450       460       470       480        

        410                     
pF1KE1 CLSLL                    
                                
CCDS10 SNASPYLVPGLVAAATIPTFTQWLC
      490       500       510   




411 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:44:39 2016 done: Sun Nov  6 21:44:40 2016
 Total Scan time:  2.470 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]