FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1201, 42 aa
  1>>>pF1KE1201 42 - 42 aa - 42 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 3.9082+/-0.000374; mu= 10.7861+/- 0.023
 mean_var=55.9843+/-11.248, 0's: 0 Z-trim(120.0): 16  B-trim: 108 in 1/53
 Lambda= 0.171412
 statistics sampled from 21441 (21462) to 21441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.946), E-opt: 0.2 (0.659), width:  16
 Scan time:  1.020

The best scores are:                                      opt bits E(32554)
CCDS9518.1 ING1 gene_id:3621|Hs108|chr13           ( 210)  242 66.6 2.7e-12
CCDS9515.1 ING1 gene_id:3621|Hs108|chr13           ( 235)  242 66.6 2.9e-12
CCDS9516.1 ING1 gene_id:3621|Hs108|chr13           ( 279)  242 66.7 3.2e-12
CCDS9517.1 ING1 gene_id:3621|Hs108|chr13           ( 422)  242 66.9 4.2e-12
CCDS3833.1 ING2 gene_id:3622|Hs108|chr4            ( 280)  230 63.7 2.5e-11


>>CCDS9518.1 ING1 gene_id:3621|Hs108|chr13                (210 aa)
 initn: 251 init1: 217 opt: 242  Z-score: 334.3  bits: 66.6 E(32554): 2.7e-12
Smith-Waterman score: 242; 76.9% identity (89.7% similar) in 39 aa overlap (1-38:154-192)

                                              10        20         
pF1KE1                               MIRCDN-ECPIEWFRFSCVSLNHKPKRKWY
                                     :: ::: :::::::.::::.:::::: :::
CCDS95 KAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY
           130       140       150       160       170       180   

      30        40                
pF1KE1 CSRCRGKNDGQSP              
       : .:::.:.                  
CCDS95 CPKCRGENEKTMDKALEKSKKERAYNR
           190       200       210

>>CCDS9515.1 ING1 gene_id:3621|Hs108|chr13                (235 aa)
 initn: 251 init1: 217 opt: 242  Z-score: 333.7  bits: 66.6 E(32554): 2.9e-12
Smith-Waterman score: 242; 76.9% identity (89.7% similar) in 39 aa overlap (1-38:179-217)

                                              10        20         
pF1KE1                               MIRCDN-ECPIEWFRFSCVSLNHKPKRKWY
                                     :: ::: :::::::.::::.:::::: :::
CCDS95 KAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY
      150       160       170       180       190       200        

      30        40                
pF1KE1 CSRCRGKNDGQSP              
       : .:::.:.                  
CCDS95 CPKCRGENEKTMDKALEKSKKERAYNR
      210       220       230     

>>CCDS9516.1 ING1 gene_id:3621|Hs108|chr13                (279 aa)
 initn: 251 init1: 217 opt: 242  Z-score: 332.9  bits: 66.7 E(32554): 3.2e-12
Smith-Waterman score: 242; 76.9% identity (89.7% similar) in 39 aa overlap (1-38:223-261)

                                              10        20         
pF1KE1                               MIRCDN-ECPIEWFRFSCVSLNHKPKRKWY
                                     :: ::: :::::::.::::.:::::: :::
CCDS95 KAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY
            200       210       220       230       240       250  

      30        40                
pF1KE1 CSRCRGKNDGQSP              
       : .:::.:.                  
CCDS95 CPKCRGENEKTMDKALEKSKKERAYNR
            260       270         

>>CCDS9517.1 ING1 gene_id:3621|Hs108|chr13                (422 aa)
 initn: 254 init1: 217 opt: 242  Z-score: 330.7  bits: 66.9 E(32554): 4.2e-12
Smith-Waterman score: 242; 76.9% identity (89.7% similar) in 39 aa overlap (1-38:366-404)

                                              10        20         
pF1KE1                               MIRCDN-ECPIEWFRFSCVSLNHKPKRKWY
                                     :: ::: :::::::.::::.:::::: :::
CCDS95 KAEREASPADLPIDPNEPTYCLCNQVSYGEMIGCDNDECPIEWFHFSCVGLNHKPKGKWY
         340       350       360       370       380       390     

      30        40                
pF1KE1 CSRCRGKNDGQSP              
       : .:::.:.                  
CCDS95 CPKCRGENEKTMDKALEKSKKERAYNR
         400       410       420  

>>CCDS3833.1 ING2 gene_id:3622|Hs108|chr4                 (280 aa)
 initn: 237 init1: 199 opt: 230  Z-score: 316.8  bits: 63.7 E(32554): 2.5e-11
Smith-Waterman score: 230; 74.4% identity (87.2% similar) in 39 aa overlap (1-38:225-263)

                                              10        20         
pF1KE1                               MIRCDNE-CPIEWFRFSCVSLNHKPKRKWY
                                     :: :::: ::::::.::::::..::: :::
CCDS38 KQEREASPVEFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWY
          200       210       220       230       240       250    

      30        40               
pF1KE1 CSRCRGKNDGQSP             
       : .::: :.                 
CCDS38 CPKCRGDNEKTMDKSTEKTKKDRRSR
          260       270       280




42 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:45:09 2016 done: Sun Nov  6 21:45:09 2016
 Total Scan time:  1.020 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]