FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6780, 142 aa 1>>>pF1KB6780 142 - 142 aa - 142 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2935+/-0.000322; mu= 11.1889+/- 0.020 mean_var=58.4347+/-11.775, 0's: 0 Z-trim(116.1): 39 B-trim: 496 in 2/51 Lambda= 0.167780 statistics sampled from 26999 (27024) to 26999 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.317), width: 16 Scan time: 4.850 The best scores are: opt bits E(85289) NP_004115 (OMIM: 601713) glia maturation factor be ( 142) 942 235.7 1.9e-62 NP_004868 (OMIM: 604104) glia maturation factor ga ( 142) 794 199.9 1.1e-51 NP_001287937 (OMIM: 604104) glia maturation factor ( 101) 587 149.8 1e-36 >>NP_004115 (OMIM: 601713) glia maturation factor beta [ (142 aa) initn: 942 init1: 942 opt: 942 Z-score: 1242.3 bits: 235.7 E(85289): 1.9e-62 Smith-Waterman score: 942; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV 70 80 90 100 110 120 130 140 pF1KB6 FEIRNTEDLTEEWLREKLGFFH :::::::::::::::::::::: NP_004 FEIRNTEDLTEEWLREKLGFFH 130 140 >>NP_004868 (OMIM: 604104) glia maturation factor gamma (142 aa) initn: 794 init1: 794 opt: 794 Z-score: 1048.7 bits: 199.9 E(85289): 1.1e-51 Smith-Waterman score: 794; 82.3% identity (96.5% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE ::.:::::.: .:.::::::::::::.:::::::.:::...:::.::...:::.::: : NP_004 MSDSLVVCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKME 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV ::::::::.:::::: :::::::::::::::::::::::::::::::::.:::::::::: NP_004 LPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV 70 80 90 100 110 120 130 140 pF1KB6 FEIRNTEDLTEEWLREKLGFFH ::::.:.:::: ::.:::.:: NP_004 FEIRTTDDLTEAWLQEKLSFFR 130 140 >>NP_001287937 (OMIM: 604104) glia maturation factor gam (101 aa) initn: 587 init1: 587 opt: 587 Z-score: 780.3 bits: 149.8 E(85289): 1e-36 Smith-Waterman score: 587; 85.0% identity (97.0% similar) in 100 aa overlap (42-141:1-100) 20 30 40 50 60 70 pF1KB6 EDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVY .:::.::...:::.::: :::::::::.:: NP_001 MVVLEEEFQNISPEELKMELPERQPRFVVY 10 20 30 80 90 100 110 120 130 pF1KB6 SYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTE :::: :::::::::::::::::::::::::::::::::.::::::::::::::.:.:::: NP_001 SYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTE 40 50 60 70 80 90 140 pF1KB6 EWLREKLGFFH ::.:::.:: NP_001 AWLQEKLSFFR 100 142 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:49:34 2016 done: Sun Nov 6 21:49:35 2016 Total Scan time: 4.850 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]