FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6780, 142 aa 1>>>pF1KB6780 142 - 142 aa - 142 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2133+/-0.000682; mu= 11.5186+/- 0.041 mean_var=57.3977+/-11.258, 0's: 0 Z-trim(109.3): 15 B-trim: 0 in 0/49 Lambda= 0.169288 statistics sampled from 10747 (10759) to 10747 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.33), width: 16 Scan time: 1.370 The best scores are: opt bits E(32554) CCDS9718.1 GMFB gene_id:2764|Hs108|chr14 ( 142) 942 237.7 1.9e-63 CCDS12532.1 GMFG gene_id:9535|Hs108|chr19 ( 142) 794 201.5 1.4e-52 CCDS74364.1 GMFG gene_id:9535|Hs108|chr19 ( 101) 587 150.9 1.7e-37 >>CCDS9718.1 GMFB gene_id:2764|Hs108|chr14 (142 aa) initn: 942 init1: 942 opt: 942 Z-score: 1252.7 bits: 237.7 E(32554): 1.9e-63 Smith-Waterman score: 942; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS97 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS97 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV 70 80 90 100 110 120 130 140 pF1KB6 FEIRNTEDLTEEWLREKLGFFH :::::::::::::::::::::: CCDS97 FEIRNTEDLTEEWLREKLGFFH 130 140 >>CCDS12532.1 GMFG gene_id:9535|Hs108|chr19 (142 aa) initn: 794 init1: 794 opt: 794 Z-score: 1057.4 bits: 201.5 E(32554): 1.4e-52 Smith-Waterman score: 794; 82.3% identity (96.5% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE ::.:::::.: .:.::::::::::::.:::::::.:::...:::.::...:::.::: : CCDS12 MSDSLVVCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKME 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV ::::::::.:::::: :::::::::::::::::::::::::::::::::.:::::::::: CCDS12 LPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV 70 80 90 100 110 120 130 140 pF1KB6 FEIRNTEDLTEEWLREKLGFFH ::::.:.:::: ::.:::.:: CCDS12 FEIRTTDDLTEAWLQEKLSFFR 130 140 >>CCDS74364.1 GMFG gene_id:9535|Hs108|chr19 (101 aa) initn: 587 init1: 587 opt: 587 Z-score: 786.5 bits: 150.9 E(32554): 1.7e-37 Smith-Waterman score: 587; 85.0% identity (97.0% similar) in 100 aa overlap (42-141:1-100) 20 30 40 50 60 70 pF1KB6 EDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVY .:::.::...:::.::: :::::::::.:: CCDS74 MVVLEEEFQNISPEELKMELPERQPRFVVY 10 20 30 80 90 100 110 120 130 pF1KB6 SYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTE :::: :::::::::::::::::::::::::::::::::.::::::::::::::.:.:::: CCDS74 SYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTE 40 50 60 70 80 90 140 pF1KB6 EWLREKLGFFH ::.:::.:: CCDS74 AWLQEKLSFFR 100 142 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:49:34 2016 done: Sun Nov 6 21:49:34 2016 Total Scan time: 1.370 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]