FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1138, 372 aa
  1>>>pF1KE1138 372 - 372 aa - 372 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4578+/-0.000905; mu= 3.7316+/- 0.055
 mean_var=177.2365+/-35.599, 0's: 0 Z-trim(112.3): 11  B-trim: 118 in 1/53
 Lambda= 0.096338
 statistics sampled from 13097 (13104) to 13097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.403), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS32618.1 ZNF830 gene_id:91603|Hs108|chr17       ( 372) 2411 346.8 1.8e-95


>>CCDS32618.1 ZNF830 gene_id:91603|Hs108|chr17            (372 aa)
 initn: 2411 init1: 2411 opt: 2411  Z-score: 1827.7  bits: 346.8 E(32554): 1.8e-95
Smith-Waterman score: 2411; 99.7% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KE1 MASSASARTPAGKRVINQEELRRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASSASARTPAGKRVINQEELRRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KSELLWQTHVLGKQHREKVAELKGAKEASQGSSASSAPQSVKRKAPDADDQDVKRAKATL
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS32 KSELLWQTHVLGKQHREKVAELKGAKEASQGSSASSAPHSVKRKAPDADDQDVKRAKATL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 VPQVQPSTSAWTTNFDKIGKEFIRATPSKPSGLSLLPDYEDEEEEEEEEEGDGERKRGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VPQVQPSTSAWTTNFDKIGKEFIRATPSKPSGLSLLPDYEDEEEEEEEEEGDGERKRGDA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SKPLSDAQGKEHSVSSSREVTSSVLPNDFFSTNPPKAPIIPHSGSIEKAEIHEKVVERRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SKPLSDAQGKEHSVSSSREVTSSVLPNDFFSTNPPKAPIIPHSGSIEKAEIHEKVVERRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 NTAEALPEGFFDDPEVDARVRKVDAPKDQMDKEWDEFQKAMRQVNTISEAIVAEEDEEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NTAEALPEGFFDDPEVDARVRKVDAPKDQMDKEWDEFQKAMRQVNTISEAIVAEEDEEGR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LDRQIGEIDEQIECYRRVEKLRNRQDEIKNKLKEILTIKELQKKEEENADSDDEGELQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LDRQIGEIDEQIECYRRVEKLRNRQDEIKNKLKEILTIKELQKKEEENADSDDEGELQDL
              310       320       330       340       350       360

              370  
pF1KE1 LSQDWRVKGALL
       ::::::::::::
CCDS32 LSQDWRVKGALL
              370  




372 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:03:18 2016 done: Sun Nov  6 22:03:19 2016
 Total Scan time:  3.310 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]