FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1130, 221 aa
  1>>>pF1KE1130 221 - 221 aa - 221 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1570+/-0.00075; mu= 15.0449+/- 0.045
 mean_var=67.8504+/-13.337, 0's: 0 Z-trim(108.7): 18  B-trim: 8 in 1/51
 Lambda= 0.155703
 statistics sampled from 10367 (10374) to 10367 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.319), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS12792.2 IZUMO2 gene_id:126123|Hs108|chr19      ( 221) 1462 336.8 6.4e-93


>>CCDS12792.2 IZUMO2 gene_id:126123|Hs108|chr19           (221 aa)
 initn: 1462 init1: 1462 opt: 1462  Z-score: 1781.7  bits: 336.8 E(32554): 6.4e-93
Smith-Waterman score: 1462; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)

               10        20        30        40        50        60
pF1KE1 MPLALTLLLLSGLGAPGGWGCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPLALTLLLLSGLGAPGGWGCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EGPFFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EGPFFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FKKVLISYELKACNPKLCRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRVALQYQMDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FKKVLISYELKACNPKLCRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRVALQYQMDS
              130       140       150       160       170       180

              190       200       210       220 
pF1KE1 KYPRNQALLGILISVSLAVFVFVVIVVSACTYRQNRKLLLQ
       :::::::::::::::::::::::::::::::::::::::::
CCDS12 KYPRNQALLGILISVSLAVFVFVVIVVSACTYRQNRKLLLQ
              190       200       210       220 




221 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:04:44 2016 done: Sun Nov  6 22:04:45 2016
 Total Scan time:  2.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]