Result of FASTA (ccds) for
pFN21AE0056
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0056, 472 aa
1>>>pF1KE0056 472 - 472 aa - 472 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4767+/-0.000791; mu= 13.2442+/- 0.048
mean_var=133.0932+/-27.761, 0's: 0 Z-trim(112.3): 175 B-trim: 112 in 1/52
Lambda= 0.111172
statistics sampled from 12853 (13083) to 12853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.402), width: 16
Scan time: 3.530
The best scores are: opt bits E(32554)
CCDS12429.1 WDR88 gene_id:126248|Hs108|chr19 ( 472) 3302 541.0 1e-153
CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1 ( 357) 436 81.2 2e-15
CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2 ( 415) 392 74.2 2.9e-13
CCDS31869.1 POC1B gene_id:282809|Hs108|chr12 ( 478) 344 66.6 6.7e-11
>>CCDS12429.1 WDR88 gene_id:126248|Hs108|chr19 (472 aa)
initn: 3302 init1: 3302 opt: 3302 Z-score: 2873.3 bits: 541.0 E(32554): 1e-153
Smith-Waterman score: 3302; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)
10 20 30 40 50 60
pF1KE0 MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LALDREPPPHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LALDREPPPHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 WKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 DSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 NVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 GHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDR
370 380 390 400 410 420
430 440 450 460 470
pF1KE0 PFSIFKSDTSSEMFTQCVFCRIDTRGLPADTSSSSSSSERENSPPPRGSKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PFSIFKSDTSSEMFTQCVFCRIDTRGLPADTSSSSSSSERENSPPPRGSKDD
430 440 450 460 470
>>CCDS340.1 SNRNP40 gene_id:9410|Hs108|chr1 (357 aa)
initn: 302 init1: 166 opt: 436 Z-score: 390.6 bits: 81.2 E(32554): 2e-15
Smith-Waterman score: 436; 26.3% identity (59.7% similar) in 308 aa overlap (92-393:56-357)
70 80 90 100 110 120
pF1KE0 ALDREPPPHLLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSGS
. :. .::::: : :.: . . : :..
CCDS34 LGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAG
30 40 50 60 70 80
130 140 150 160 170 180
pF1KE0 YDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLLW
.: . ::. . .. :.: . :.: ...:: :::: .:: :::. .
CCDS34 FDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVK
90 100 110 120 130 140
190 200 210 220 230
pF1KE0 KVR-YDTFIVSCKFSPDG-KYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFD
... . .:. :: . : . : .: : : . . : .. ........ : .. . :.
CCDS34 RLKGHTSFVNSCYPARRGPQLVCTGSD-DGTVKLWDIRKKAAIQTFQN--TYQVLAVTFN
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE0 PDSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKI
:... : ..: ::.::. : : ..:...... .. : .: ... :.....
CCDS34 DTSDQIISGGIDNDIKVWDLR-QNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRV
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE0 WNVHTGEFRNCGACVTLMQGH----EGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYR
:.:. : :: ..::. : .. : .. :.: . .:. :: : .::..
CCDS34 WDVRP--FAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRI
270 280 290 300 310
360 370 380 390 400 410
pF1KE0 KLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQC
.: :: . .::. .. :.:::.:. . . .:.
CCDS34 LYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ
320 330 340 350
420 430 440 450 460 470
pF1KE0 ERCDRPFSIFKSDTSSEMFTQCVFCRIDTRGLPADTSSSSSSSERENSPPPRGSKDD
>>CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2 (415 aa)
initn: 359 init1: 175 opt: 392 Z-score: 351.6 bits: 74.2 E(32554): 2.9e-13
Smith-Waterman score: 511; 26.9% identity (60.2% similar) in 394 aa overlap (5-390:37-414)
10 20 30
pF1KE0 MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLS
: . .: .: . : ::. ::
CCDS24 LLRYYPPGIMLEYEKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLL
10 20 30 40 50 60
40 50 60 70 80
pF1KE0 WGTMARALGR------FKLSIPHTHLLATLDPLALDREPPPHLLPEKHQVPEKLIWGDQD
. . ::. . ... ..:.: : .::.. .. ... :: : :
CCDS24 IQRLQEKLGQNSNHTFYLFKVLKAHILP-LTNVALNKSGS-CFITGSYDRTCKL-W---D
70 80 90 100 110 120
90 100 110 120 130 140
pF1KE0 PLSKIPFKILSGHEHAVSTCHFCVD-DTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAP
: .. : ::...: . : :. .::.: : :::. :. . :. . :
CCDS24 TASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHT-AE
130 140 150 160 170
150 160 170 180 190 200
pF1KE0 VVECSITGDSSRVIAASYDKTVRAWDLETGKLLWKVR-YDTFIVSCKFSPDGKYVVSGFD
.: :.. .:. : ..:.: :.. ::...:. .. .: ... :.: .:. .: ...: .
CCDS24 IVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITG-S
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE0 VDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLL
:: . . ::.. :... : .. :.: :. : . . . :.:. :.::.:. .
CCDS24 FDHTVVVWDADTGRKVNILIGHCAE-ISSASFNWDCSLILTGSMDKTCKLWDATNGKCVA
240 250 260 270 280 290
270 280 290 300 310 320
pF1KE0 TITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSS
:.: .:.. : . :: ..:... :.: : . .:... : . :.. ..:::: .:.
CCDS24 TLT-GHDDEILDSCFDYTGKLIATASADGTARIFSAATRK------CIAKLEGHEGEISK
300 310 320 330 340 350
330 340 350 360 370 380
pF1KE0 CHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRT
: ... :..:. :.:. :::. : :.::.: ... :.. . . ....::: :
CCDS24 ISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNT
360 370 380 390 400 410
390 400 410 420 430 440
pF1KE0 MRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDRPFSIFKSDTSSEMFTQCVFCRIDTRG
:.:
CCDS24 CRIWR
>>CCDS31869.1 POC1B gene_id:282809|Hs108|chr12 (478 aa)
initn: 169 init1: 100 opt: 344 Z-score: 309.2 bits: 66.6 E(32554): 6.7e-11
Smith-Waterman score: 406; 28.9% identity (58.1% similar) in 301 aa overlap (62-361:23-308)
40 50 60 70 80 90
pF1KE0 KLSWGTMARALGRFKLSIPHTHLLATLDPLALDREPPPHLLPEKHQVPEKLIWGDQDPLS
.:: : . : ..: . : .
CCDS31 MASATEDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLW-NFKPHA
10 20 30 40 50
100 110 120 130 140 150
pF1KE0 KIPFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAPVVEC
. .. . ::. .:.. .: . : :.: : ::.:: : . .:. . :::
CCDS31 RA-YRYV-GHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHT-APVRSV
60 70 80 90 100
160 170 180 190 200 210
pF1KE0 SITGDSSRVIAASYDKTVRAWDLETGKLLWKVRYDTFIVSC-KFSPDGKYVVSGFDVDHG
....:.. . .:: ::....:.. ..:... : : : ::::::. .:: . :.
CCDS31 DFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSE-DKT
110 120 130 140 150 160
220 230 240 250 260 270
pF1KE0 ICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLLTITK
: : :. : :. ..: . . :.:.. .::.. :. .:.::: . :: .
CCDS31 IKIWDTTNKQCVNNFSDS-VGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNK-LLQHYQ
170 180 190 200 210 220
280 290 300 310 320 330
pF1KE0 AHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSSCHFA
.::.... : ::..: :.: : .::: .. :.. . .::: : : . :.
CCDS31 VHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRL------IYTLQGHTGPVFTVSFS
230 240 250 260 270
340 350 360 370 380 390
pF1KE0 RDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLW
. . .. ::: : : .: . .. .: ::
CCDS31 KGGELFASGGADTQVLLWRT--NFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHE
280 290 300 310 320 330
400 410 420 430 440 450
pF1KE0 NIEEIDEIPLVIKYKKAVGLKLKQCERCDRPFSIFKSDTSSEMFTQCVFCRIDTRGLPAD
CCDS31 EKVETVEINPKLEVIDLQISTPPVMDILSFDSTTTTETSGRTLPDKGEEACGYFLNPSLM
340 350 360 370 380 390
472 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:49:23 2016 done: Fri Nov 4 05:49:23 2016
Total Scan time: 3.530 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]