Restriction map for
pFN21AB6966
(Circular) (Six-base) MAPSORT of: pFN21AB6966.seq Check: 5195 from: 1 to: 5428
pFN21AB6966 5428 bp
With 182 enzymes: SgfI *
October 20, 2009 10:42 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3238 278
Size: 53 83 186 936 1702 2468
Fragments arranged by size:
2468 1702 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2771 1937
Size: 834 4594
Acc65I G'GTAC_C
Cuts at: 2280 2749 2280
Size: 469 4959
AclI AA'CG_TT
Cuts at: 1563 3555 3928 1563
Size: 1992 373 3063
Fragments arranged by size:
3063 1992 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2031 2238 2435 2496 3491 4875 5143 1632
Size: 399 207 197 61 995 1384 268 1917
Fragments arranged by size:
1917 1384 995 399 268 207 197 61
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5231
AflIII A'CryG_T
Cuts at: 1203 4327 5304 1203
Size: 3124 977 1327
Fragments arranged by size:
3124 1327 977
AgeI A'CCGG_T
Cuts at: 4259 4259
Size: 5428
AhdI GACnn_n'nnGTC
Cuts at: 4157 4157
Size: 5428
AleI CACnn'nnGTG
Cuts at: 1166 2219 1166
Size: 1053 4375
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2237 2284 2561 1184
Size: 1053 47 277 4051
Fragments arranged by size:
4051 1053 277 47
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2294 2326 2294
Size: 32 5396
AlwNI CAG_nnn'CTG
Cuts at: 2092 2176 3171 4743 2092
Size: 84 995 1572 2777
Fragments arranged by size:
2777 1572 995 84
ApaLI G'TGCA_C
Cuts at: 2222 3485 4641 2222
Size: 1263 1156 3009
Fragments arranged by size:
3009 1263 1156
ApoI r'AATT_y
Cuts at: 1493 2249 2342 2362 2657 2737 2963 3115 5224
Size: 756 93 20 295 80 226 152 2109
Cuts at: 5224 1493
Size: 1697
Fragments arranged by size:
2109 1697 756 295 226 152 93 80
20
AseI AT'TA_AT
Cuts at: 160 1032 3982 160
Size: 872 2950 1606
Fragments arranged by size:
2950 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5428
AvaI C'yCGr_G
Cuts at: 1870 1943 2603 2649 2753 1870
Size: 73 660 46 104 4545
Fragments arranged by size:
4545 660 104 73 46
BamHI G'GATC_C
Cuts at: 2758 3125 2758
Size: 367 5061
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2280 2749 4204 618
Size: 325 217 627 493 469 1455 1842
Fragments arranged by size:
1842 1455 627 493 469 325 217
BanII G_rGCy'C
Cuts at: 1391 2523 2697 2747 1391
Size: 1132 174 50 4072
Fragments arranged by size:
4072 1132 174 50
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4457
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3619 3653 1903
Size: 34 1682 34 3678
Fragments arranged by size:
3678 1682 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3320 4530 3320
Size: 1210 4218
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5428
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4039 136
Size: 107 122 71 631 605 2367 1525
Fragments arranged by size:
2367 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5423 5423
Size: 5428
BlpI GC'TnA_GC
Cuts at: 2845 2845
Size: 5428
Bme1580I G_kGCm'C
Cuts at: 1790 2183 2226 2273 3489 4645 1790
Size: 393 43 47 1216 1156 2573
Fragments arranged by size:
2573 1216 1156 393 47 43
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5428
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3159 4117 442
Size: 416 53 83 399 24 1742 958 1753
Fragments arranged by size:
1753 1742 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5428
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2276 2411 4088 1239
Size: 1037 135 1677 2579
Fragments arranged by size:
2579 1677 1037 135
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2096 2653 3553 4418 4716 2096
Size: 557 900 865 298 2808
Fragments arranged by size:
2808 900 865 557 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4091 882
Size: 617 2592 2219
Fragments arranged by size:
2592 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3219 493
Size: 711 2015 2702
Fragments arranged by size:
2702 2015 711
BsaBI GATnn'nnATC
Cuts at: 5422 5422
Size: 5428
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3235 3617 4252 275
Size: 53 83 186 936 1702 382 635 1451
Fragments arranged by size:
1702 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3861 4259 4533 4680 5091 3861
Size: 398 274 147 411 4198
Fragments arranged by size:
4198 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5203
Fragments arranged by size:
5203 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2699 1186
Size: 1513 3915
BseYI C'CCAG_C
Cuts at: 2321 2371 4631 5127 2321
Size: 50 2260 496 2622
Fragments arranged by size:
2622 2260 496 50
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2189 1163
Size: 573 453 4402
Fragments arranged by size:
4402 573 453
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2878 3639 4667 1540
Size: 275 186 877 761 1028 2301
Fragments arranged by size:
2301 1028 877 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2226 2523 2697 3489 3574 4645 2226
Size: 297 174 792 85 1071 3009
Fragments arranged by size:
3009 1071 792 297 174 85
BsmI GAATG_Cn'
Cuts at: 2939 3032 2939
Size: 93 5335
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2183 2226 2273 2523 2697 2747 3489
Size: 399 393 43 47 250 174 50 742
Cuts at: 3489 3574 4645 1391
Size: 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 393 250 174 85
50 47 43
BspEI T'CCGG_A
Cuts at: 5091 5091
Size: 5428
BspHI T'CATG_A
Cuts at: 3317 5047 3317
Size: 1730 3698
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2014 2783 844
Size: 1170 769 3489
Fragments arranged by size:
3489 1170 769
BsrBI CCG'CTC
Cuts at: 1394 1823 3315 1394
Size: 429 1492 3507
Fragments arranged by size:
3507 1492 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2644 3923 4097 65
Size: 1183 1396 1279 174 1396
Fragments arranged by size:
1396 1396 1279 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4072 4259 1700
Size: 110 2262 187 2869
Fragments arranged by size:
2869 2262 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5428
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5428
BssSI C'ACGA_G
Cuts at: 3488 4500 3488
Size: 1012 4416
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5428
BstBI TT'CG_AA
Cuts at: 4232 4232
Size: 5428
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5428
BstYI r'GATC_y
Cuts at: 1972 2758 3125 3510 3527 4979 5065 5077 5423
Size: 786 367 385 17 1452 86 12 346
Cuts at: 5423 1972
Size: 1977
Fragments arranged by size:
1977 1452 786 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3937
Fragments arranged by size:
3937 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4689
Fragments arranged by size:
4689 683 56
BtsI GCAGTG_nn'
Cuts at: 2056 2268 2944 3738 3758 2056
Size: 212 676 794 20 3726
Fragments arranged by size:
3726 794 676 212 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5428
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5393
DraI TTT'AAA
Cuts at: 2732 2732
Size: 5428
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4435 809
Size: 507 3119 1802
Fragments arranged by size:
3119 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2875 3764 5393
Size: 54 1425 50 275 18 1045 889 1629
Cuts at: 5393 8
Size: 43
Fragments arranged by size:
1629 1425 1045 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2875 1537
Size: 275 1063 4090
Fragments arranged by size:
4090 1063 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3358 1353
Size: 2005 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2170 4015 4389 4535 387
Size: 1064 138 581 1845 374 146 1280
Fragments arranged by size:
1845 1280 1064 581 374 146 138
EcoICRI GAG'CTC
Cuts at: 2521 2695 2521
Size: 174 5254
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2031 2238 2276 2411 2435 2496 3491
Size: 393 399 207 38 135 24 61 995
Cuts at: 3491 4088 4875 5143 1239
Size: 597 787 268 1524
Fragments arranged by size:
1524 995 787 597 399 393 268 207
135 61 38 24
EcoO109I rG'GnC_Cy
Cuts at: 2719 2719
Size: 5428
EcoRI G'AATT_C
Cuts at: 2362 2657 2737 3115 2362
Size: 295 80 378 4675
Fragments arranged by size:
4675 378 295 80
FspI TGC'GCA
Cuts at: 3934 3934
Size: 5428
HaeII r_GCGC'y
Cuts at: 1678 4575 1678
Size: 2897 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2583 2615 4069 4101 4143
Size: 32 135 32 1011 32 1454 32 42
Cuts at: 4143 4175 1373
Size: 32 2626
Fragments arranged by size:
2626 1454 1011 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2143 2772 3018 669
Size: 988 281 205 629 246 3079
Fragments arranged by size:
3079 988 629 281 246 205
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5428
HpaI GTT'AAC
Cuts at: 3018 3018
Size: 5428
KpnI G_GTAC'C
Cuts at: 2284 2753 2284
Size: 469 4959
MfeI C'AATT_G
Cuts at: 3027 3027
Size: 5428
MluI A'CGCG_T
Cuts at: 5304 5304
Size: 5428
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2337 4542 4726 1305
Size: 1032 2205 184 2007
Fragments arranged by size:
2205 2007 1032 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3606
Fragments arranged by size:
3606 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2219 3386 3745 3904 518
Size: 648 1053 1167 359 159 2042
Fragments arranged by size:
2042 1167 1053 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2321 2844 3521 4669 4914 1606
Size: 715 523 677 1148 245 2120
Fragments arranged by size:
2120 1148 715 677 523 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3937
Fragments arranged by size:
3937 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5428
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5428
NotI GC'GGCC_GC
Cuts at: 2875 2875
Size: 5428
NspI r_CATG'y
Cuts at: 1132 1229 2786 4331 1132
Size: 97 1557 1545 2229
Fragments arranged by size:
2229 1557 1545 97
PasI CC'CwG_GG
Cuts at: 1348 2183 1348
Size: 835 4593
PciI A'CATG_T
Cuts at: 4327 4327
Size: 5428
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5428
PmeI GTTT'AAAC
Cuts at: 2732 2732
Size: 5428
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3497 3529 5010 5042 3497
Size: 32 1481 32 3883
Fragments arranged by size:
3883 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5428
PsiI TTA'TAA
Cuts at: 2998 2998
Size: 5428
PstI C_TGCA'G
Cuts at: 830 2780 830
Size: 1950 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5428
PvuII CAG'CTG
Cuts at: 2321 2321
Size: 5428
RsrII CG'GwC_CG
Cuts at: 2157 2157
Size: 5428
SacI G_AGCT'C
Cuts at: 2523 2697 2523
Size: 174 5254
SalI G'TCGA_C
Cuts at: 1936 2770 1936
Size: 834 4594
SbfI CC_TGCA'GG
Cuts at: 2780 2780
Size: 5428
ScaI AGT'ACT
Cuts at: 3676 5388 3676
Size: 1712 3716
SfcI C'TryA_G
Cuts at: 826 1045 2776 3911 4592 4783 826
Size: 219 1731 1135 681 191 1471
Fragments arranged by size:
1731 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5428
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5428
SmaI CCC'GGG
Cuts at: 1872 2651 2755 1872
Size: 779 104 4545
Fragments arranged by size:
4545 779 104
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2111 2632 3532 4433 4695 820
Size: 197 926 168 521 900 901 262 1553
Fragments arranged by size:
1553 926 901 900 521 262 197 168
SnaBI TAC'GTA
Cuts at: 493 3219 493
Size: 2726 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5428
SphI G_CATG'C
Cuts at: 1132 2786 1132
Size: 1654 3774
SspI AAT'ATT
Cuts at: 5 52 3352 5
Size: 47 3300 2081
Fragments arranged by size:
3300 2081 47
StuI AGG'CCT
Cuts at: 1517 2609 1517
Size: 1092 4336
StyI C'CwwG_G
Cuts at: 513 1065 2004 2867 513
Size: 552 939 863 3074
Fragments arranged by size:
3074 939 863 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2174 3455 3472 3625 3810 4255 325
Size: 1255 594 1281 17 153 185 445 1498
Fragments arranged by size:
1498 1281 1255 594 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2563 3674 5386
Size: 274 80 33 51 1443 586 1111 1712
Cuts at: 5386 96
Size: 138
Fragments arranged by size:
1712 1443 1111 586 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5388 5420 5388
Size: 32 5396
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5428
XbaI T'CTAG_A
Cuts at: 2764 2764
Size: 5428
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5428
XmaI C'CCGG_G
Cuts at: 1870 2649 2753 1870
Size: 779 104 4545
Fragments arranged by size:
4545 779 104
XmnI GAAnn'nnTTC
Cuts at: 3557 3557
Size: 5428
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3236 276
Size: 53 83 186 936 1702 2468
Fragments arranged by size:
2468 1702 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI
Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PmeI PpiI PshAI PsiI PstI PvuI PvuII RsrII
SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI
PspOMI PspXI PsrI SacII SanDI SapI SexAI SfiI
SfoI SrfI SwaI XcmI