Result of FASTA (ccds) for
pFN21AB6926
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6926, 228 aa
1>>>pF1KB6926 228 - 228 aa - 228 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2297+/-0.00106; mu= 14.1228+/- 0.064
mean_var=78.2513+/-15.299, 0's: 0 Z-trim(103.9): 218 B-trim: 4 in 1/49
Lambda= 0.144987
statistics sampled from 7386 (7626) to 7386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.234), width: 16
Scan time: 1.590
The best scores are: opt bits E(32554)
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 1491 321.6 2.7e-88
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 1263 273.9 5.9e-74
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 1252 271.5 2.7e-73
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 1155 251.3 3.7e-67
CCDS54162.1 RAB37 gene_id:326624|Hs108|chr17 ( 186) 1006 220.1 7.9e-58
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 970 212.6 1.9e-55
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 959 210.2 7.3e-55
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 646 144.8 4e-35
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 632 141.9 3e-34
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 615 138.3 3.5e-33
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 599 134.9 3.5e-32
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 597 134.5 4.8e-32
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 585 132.0 2.7e-31
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 568 128.5 3.3e-30
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 568 128.5 3.4e-30
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 544 123.5 1.1e-28
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 527 119.9 1.2e-27
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 524 119.3 2e-27
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 518 118.0 4.7e-27
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 ( 227) 514 117.2 8.8e-27
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 512 116.8 1.1e-26
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 ( 212) 511 116.6 1.3e-26
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 ( 219) 508 115.9 2e-26
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 ( 219) 507 115.7 2.4e-26
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 500 114.2 6.1e-26
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 486 111.3 4.9e-25
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 484 110.9 6.5e-25
CCDS6662.1 RASEF gene_id:158158|Hs108|chr9 ( 740) 487 112.0 1.1e-24
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 478 109.7 1.5e-24
CCDS56537.1 RAB2A gene_id:5862|Hs108|chr8 ( 188) 476 109.2 1.9e-24
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10 ( 206) 475 109.0 2.3e-24
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 475 109.0 2.4e-24
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1 ( 218) 473 108.6 3.2e-24
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 470 108.0 5e-24
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 470 108.0 5.5e-24
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 469 107.8 5.7e-24
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 465 107.0 1.1e-23
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11 ( 217) 462 106.3 1.6e-23
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 461 106.1 1.8e-23
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12 ( 731) 465 107.4 2.6e-23
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 458 105.5 2.8e-23
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 458 105.5 2.9e-23
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 454 104.6 4.9e-23
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1 ( 213) 451 104.0 7.7e-23
CCDS75442.1 RAB44 gene_id:401258|Hs108|chr6 (1021) 459 106.2 8e-23
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4 ( 229) 434 100.5 9.6e-22
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX ( 221) 432 100.1 1.2e-21
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 ( 212) 416 96.7 1.2e-20
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 ( 254) 413 96.1 2.2e-20
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX ( 237) 412 95.9 2.4e-20
>>CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 (228 aa)
initn: 1491 init1: 1491 opt: 1491 Z-score: 1698.8 bits: 321.6 E(32554): 2.7e-88
Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB6 MWLMSEAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MWLMSEAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAK
130 140 150 160 170 180
190 200 210 220
pF1KB6 TGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
190 200 210 220
>>CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 (223 aa)
initn: 1252 init1: 1252 opt: 1263 Z-score: 1441.2 bits: 273.9 E(32554): 5.9e-74
Smith-Waterman score: 1263; 97.0% identity (98.0% similar) in 202 aa overlap (29-228:22-223)
10 20 30 40 50
pF1KB6 MWLMSEAHGAEPVLLREAARPFTQTLRLCVPSGN--SKVMLLGDTGVGKTCFLIQFKDGA
: :: . .:::::::::::::::::::::::
CCDS32 MTGTPGAVATRDGEAPERSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGA
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 FLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDIT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETS
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 AKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
180 190 200 210 220
>>CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 (196 aa)
initn: 1252 init1: 1252 opt: 1252 Z-score: 1429.5 bits: 271.5 E(32554): 2.7e-73
Smith-Waterman score: 1252; 100.0% identity (100.0% similar) in 193 aa overlap (36-228:4-196)
10 20 30 40 50 60
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
::::::::::::::::::::::::::::::
CCDS82 MCCKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
10 20 30
70 80 90 100 110 120
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
100 110 120 130 140 150
190 200 210 220
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
:::::::::::::::::::::::::::::::::::::::::::
CCDS82 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
160 170 180 190
>>CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 (216 aa)
initn: 1155 init1: 1155 opt: 1155 Z-score: 1319.3 bits: 251.3 E(32554): 3.7e-67
Smith-Waterman score: 1155; 91.7% identity (96.4% similar) in 193 aa overlap (36-228:24-216)
10 20 30 40 50 60
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
:..:.::.::::: .:.:: .: :. :.:
CCDS11 MDLQRPDSYQGGAGPDFNDHVLHKTILVGDSGVGKTSLLVQFDQGKFIPGSFS
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
::::: : ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ATVGIGFTNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
120 130 140 150 160 170
190 200 210 220
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
:::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
180 190 200 210
>>CCDS54162.1 RAB37 gene_id:326624|Hs108|chr17 (186 aa)
initn: 1006 init1: 1006 opt: 1006 Z-score: 1151.7 bits: 220.1 E(32554): 7.9e-58
Smith-Waterman score: 1006; 99.4% identity (100.0% similar) in 156 aa overlap (73-228:31-186)
50 60 70 80 90 100
pF1KB6 TGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTH
.:::::::::::::::::::::::::::::
CCDS54 MTGTPGAVATRDGEAPERSPPCSPSYDLTGKNKVVTVDGVRVKLQIWDTAGQERFRSVTH
10 20 30 40 50 60
110 120 130 140 150 160
pF1KB6 AYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSED
70 80 90 100 110 120
170 180 190 200 210 220
pF1KB6 GETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRS
130 140 150 160 170 180
pF1KB6 SCCSFM
::::::
CCDS54 SCCSFM
>>CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 (256 aa)
initn: 970 init1: 970 opt: 970 Z-score: 1109.1 bits: 212.6 E(32554): 1.9e-55
Smith-Waterman score: 970; 73.7% identity (92.6% similar) in 190 aa overlap (36-225:65-254)
10 20 30 40 50 60
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
::::.::.::::::.:..:::::::.::::
CCDS10 LSGPDAPPNGPLQPGRPSLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI
40 50 60 70 80 90
70 80 90 100 110 120
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
.::::::::::. ::::.::::.::::::::::::::::::::.:::::::.:::.::::
CCDS10 STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN
100 110 120 130 140 150
130 140 150 160 170 180
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
:.:::::::::::.::..::::::.: . :::.. :::: ::.:::.::.:::::::.::
CCDS10 IQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV
160 170 180 190 200 210
190 200 210 220
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
.::: ::::::: :. . .:: :...:::. . . .:::
CCDS10 DLAFTAIAKELKQRSMKAPSEPRFRLHDYVKREGRGASCCRP
220 230 240 250
>>CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 (190 aa)
initn: 959 init1: 959 opt: 959 Z-score: 1098.4 bits: 210.2 E(32554): 7.3e-55
Smith-Waterman score: 959; 73.4% identity (92.6% similar) in 188 aa overlap (38-225:1-188)
10 20 30 40 50 60
pF1KB6 HGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIAT
::.::.::::::.:..:::::::.::::.:
CCDS76 MLVGDSGVGKTCLLVRFKDGAFLAGTFIST
10 20 30
70 80 90 100 110 120
pF1KB6 VGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIR
:::::::::. ::::.::::.::::::::::::::::::::.:::::::.:::.:::::.
CCDS76 VGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 AWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVEL
:::::::::::.::..::::::.: . :::.. :::: ::.:::.::.:::::::.::.:
CCDS76 AWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL
100 110 120 130 140 150
190 200 210 220
pF1KB6 AFLAIAKELKYRAGHQADEPSFQIRDYVESQKKRSSCCSFM
:: ::::::: :. . .:: :...:::. . . .:::
CCDS76 AFTAIAKELKQRSMKAPSEPRFRLHDYVKREGRGASCCRP
160 170 180 190
>>CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 (207 aa)
initn: 649 init1: 537 opt: 646 Z-score: 744.1 bits: 144.8 E(32554): 4e-35
Smith-Waterman score: 646; 51.6% identity (81.2% similar) in 192 aa overlap (36-223:10-200)
10 20 30 40 50 60
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
:..:.::.:::::: :..:.. :: : :::
CCDS12 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFI
10 20 30
70 80 90 100 110 120
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
.:.::::. ... .:: :.::::::::::::::..: :::: :....:.:::::..::::
CCDS12 STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
:: :. .:.:.:. :: :.:::: :....: . .: :: :: .::. :.:::::...::
CCDS12 IRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV
100 110 120 130 140 150
190 200 210 220
pF1KB6 ELAFLAIAKELKYRAGHQ--ADEP--SFQIRDYVESQKKRSSCCSFM
: ::...:...: . .. .. : : : . .:.::::
CCDS12 ENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL
160 170 180 190 200
>>CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 (207 aa)
initn: 626 init1: 531 opt: 632 Z-score: 728.3 bits: 141.9 E(32554): 3e-34
Smith-Waterman score: 632; 49.7% identity (79.8% similar) in 193 aa overlap (36-227:10-201)
10 20 30 40 50 60
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
:..:.::.::::::.:..:.. :: . :::
CCDS10 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAF-NTTFI
10 20 30
70 80 90 100 110 120
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
.:.::::. ... .:: ..::::::::::::::..: :::: :....:.:::::..::::
CCDS10 STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
:. :. .:.:.:. :: :.:::: ::...: . .: :: :: .::. :::::::.. ::
CCDS10 IKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANV
100 110 120 130 140 150
190 200 210 220
pF1KB6 ELAFLAIAKELKYRAGHQA-DEPSFQIRDYVESQKKRSSCCSFM
: ::...:... . ... : : :. ..::. ::
CCDS10 EEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL
160 170 180 190 200
>>CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 (200 aa)
initn: 625 init1: 506 opt: 615 Z-score: 709.3 bits: 138.3 E(32554): 3.5e-33
Smith-Waterman score: 615; 49.2% identity (78.8% similar) in 193 aa overlap (36-225:11-200)
10 20 30 40 50 60
pF1KB6 EAHGAEPVLLREAARPFTQTLRLCVPSGNSKVMLLGDTGVGKTCFLIQFKDGAFLSGTFI
:..:.::.:::::: :..:.: :: . :::
CCDS17 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAF-NTTFI
10 20 30
70 80 90 100 110 120
pF1KB6 ATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDN
.:.::::. :.: ..: ..:::::::::::::...: .::: :....:.::::: .::.:
CCDS17 STIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFEN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 IRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNV
: :: .: :.:..:: :::::: ::...::. . :: .:::.:. :.:::::...:.
CCDS17 ISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINI
100 110 120 130 140 150
190 200 210 220
pF1KB6 ELAFLAIAKELKYRAGHQADEPSFQIRDYVES---QKKRSSCCSFM
: :::..:... .. . ::. . : . .:.::
CCDS17 EKAFLTLAEDILRKT--PVKEPNSENVDISSGGGVTGWKSKCC
160 170 180 190 200
228 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:09:00 2016 done: Fri Nov 4 12:09:01 2016
Total Scan time: 1.590 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]