Result of FASTA (omim) for
pFN21AB6809
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6809, 159 aa
1>>>pF1KB6809 159 - 159 aa - 159 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5684+/-0.00035; mu= 15.5898+/- 0.022
mean_var=50.5056+/-10.293, 0's: 0 Z-trim(113.4): 22 B-trim: 0 in 0/51
Lambda= 0.180470
statistics sampled from 22732 (22743) to 22732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.267), width: 16
Scan time: 5.260
The best scores are: opt bits E(85289)
NP_065083 (OMIM: 608729) type-1 angiotensin II rec ( 159) 1066 284.8 3.9e-77
XP_011540102 (OMIM: 608729) PREDICTED: type-1 angi ( 171) 1013 271.0 5.9e-73
NP_001035284 (OMIM: 608729) type-1 angiotensin II ( 152) 998 267.1 8.1e-72
XP_011540101 (OMIM: 608729) PREDICTED: type-1 angi ( 164) 945 253.3 1.2e-67
NP_001035287 (OMIM: 608729) type-1 angiotensin II ( 147) 130 41.1 0.00084
NP_001035286 (OMIM: 608729) type-1 angiotensin II ( 155) 130 41.1 0.00088
>>NP_065083 (OMIM: 608729) type-1 angiotensin II recepto (159 aa)
initn: 1066 init1: 1066 opt: 1066 Z-score: 1505.8 bits: 284.8 E(85289): 3.9e-77
Smith-Waterman score: 1066; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB6 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
70 80 90 100 110 120
130 140 150
pF1KB6 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
:::::::::::::::::::::::::::::::::::::::
NP_065 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
130 140 150
>>XP_011540102 (OMIM: 608729) PREDICTED: type-1 angioten (171 aa)
initn: 1052 init1: 1010 opt: 1013 Z-score: 1430.7 bits: 271.0 E(85289): 5.9e-73
Smith-Waterman score: 1032; 93.0% identity (93.0% similar) in 171 aa overlap (1-159:1-171)
10 20 30 40
pF1KB6 MELPAVNLK------------VILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
::::::::: :::::::::::::::::::::::::::::::::::::::
XP_011 MELPAVNLKCASSSVPRNHPHVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
70 80 90 100 110 120
110 120 130 140 150
pF1KB6 MYRERGGELLVHTGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MYRERGGELLVHTGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
130 140 150 160 170
>>NP_001035284 (OMIM: 608729) type-1 angiotensin II rece (152 aa)
initn: 777 init1: 777 opt: 998 Z-score: 1410.4 bits: 267.1 E(85289): 8.1e-72
Smith-Waterman score: 998; 95.6% identity (95.6% similar) in 159 aa overlap (1-159:1-152)
10 20 30 40 50 60
pF1KB6 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELPAVNLKVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFLGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGGELLVH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYHMYRERGG-----
70 80 90 100 110
130 140 150
pF1KB6 TGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
:::::::::::::::::::::::::::::::::::::
NP_001 --FLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
120 130 140 150
>>XP_011540101 (OMIM: 608729) PREDICTED: type-1 angioten (164 aa)
initn: 763 init1: 721 opt: 945 Z-score: 1335.3 bits: 253.3 E(85289): 1.2e-67
Smith-Waterman score: 964; 88.9% identity (88.9% similar) in 171 aa overlap (1-159:1-164)
10 20 30 40
pF1KB6 MELPAVNLK------------VILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
::::::::: :::::::::::::::::::::::::::::::::::::::
XP_011 MELPAVNLKCASSSVPRNHPHVILLGHWLLTTWGCIVFSGSYAWANFTILALGVWAVAQR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSIDAISMFLGGLLATIFLDIVHISIFYPRVSLTDTGRFGVGMAILSLLLKPLSCCFVYH
70 80 90 100 110 120
110 120 130 140 150
pF1KB6 MYRERGGELLVHTGFLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
::::::: :::::::::::::::::::::::::::::::::::::
XP_011 MYRERGG-------FLGSSQDRSAYQTIDSAEAPADPFAVPEGRSQDARGY
130 140 150 160
>>NP_001035287 (OMIM: 608729) type-1 angiotensin II rece (147 aa)
initn: 142 init1: 129 opt: 130 Z-score: 189.2 bits: 41.1 E(85289): 0.00084
Smith-Waterman score: 130; 91.3% identity (91.3% similar) in 23 aa overlap (1-21:1-23)
10 20 30 40 50
pF1KB6 MELPAVNLKVILLGHWLLTT--WGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFL
:::::::::::::::::::: :
NP_001 MELPAVNLKVILLGHWLLTTCFWRHFSAKPRLETIELTCALCKLRSAAHRATAGLHCILR
10 20 30 40 50 60
>>NP_001035286 (OMIM: 608729) type-1 angiotensin II rece (155 aa)
initn: 142 init1: 129 opt: 130 Z-score: 188.9 bits: 41.1 E(85289): 0.00088
Smith-Waterman score: 130; 91.3% identity (91.3% similar) in 23 aa overlap (1-21:1-23)
10 20 30 40 50
pF1KB6 MELPAVNLKVILLGHWLLTT--WGCIVFSGSYAWANFTILALGVWAVAQRDSIDAISMFL
:::::::::::::::::::: :
NP_001 MELPAVNLKVILLGHWLLTTCFWRHFSAKPRLETIELTCALCKLRSAAHRATAGLHCILR
10 20 30 40 50 60
159 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:38:37 2016 done: Fri Nov 4 14:38:38 2016
Total Scan time: 5.260 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]