(Circular) (Six-base) MAPSORT of: pFN21AB6828.seq Check: 9042 from: 1 to: 5269 pFN21AB6828 5269 bp With 182 enzymes: SgfI * October 20, 2009 10:43 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3079 278 Size: 53 83 186 936 1543 2468 Fragments arranged by size: 2468 1543 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2612 1937 Size: 675 4594 Acc65I G'GTAC_C Cuts at: 2590 2590 Size: 5269 AclI AA'CG_TT Cuts at: 1563 3396 3769 1563 Size: 1833 373 3063 Fragments arranged by size: 3063 1833 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2020 3332 4716 4984 1632 Size: 388 1312 1384 268 1917 Fragments arranged by size: 1917 1384 1312 388 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5072 AflIII A'CryG_T Cuts at: 1203 4168 5145 1203 Size: 2965 977 1327 Fragments arranged by size: 2965 1327 977 AgeI A'CCGG_T Cuts at: 4100 4100 Size: 5269 AhdI GACnn_n'nnGTC Cuts at: 3998 3998 Size: 5269 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5269 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5269 AlwNI CAG_nnn'CTG Cuts at: 3012 4584 3012 Size: 1572 3697 ApaLI G'TGCA_C Cuts at: 3326 4482 3326 Size: 1156 4113 ApoI r'AATT_y Cuts at: 1493 2578 2804 2956 5065 1493 Size: 1085 226 152 2109 1697 Fragments arranged by size: 2109 1697 1085 226 152 AseI AT'TA_AT Cuts at: 160 1032 3823 160 Size: 872 2791 1606 Fragments arranged by size: 2791 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5269 AvaI C'yCGr_G Cuts at: 1870 1943 2594 1870 Size: 73 651 4545 Fragments arranged by size: 4545 651 73 BamHI G'GATC_C Cuts at: 2599 2966 2599 Size: 367 4902 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2488 2590 4045 618 Size: 325 217 627 701 102 1455 1842 Fragments arranged by size: 1842 1455 701 627 325 217 102 BanII G_rGCy'C Cuts at: 1391 2588 1391 Size: 1197 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4298 BbvCI CC'TCA_GC Cuts at: 2425 2425 Size: 5269 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3460 3494 1903 Size: 34 1523 34 3678 Fragments arranged by size: 3678 1523 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3161 4371 3161 Size: 1210 4059 BclI T'GATC_A Cuts at: 1548 1548 Size: 5269 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3880 136 Size: 107 122 71 631 605 2208 1525 Fragments arranged by size: 2208 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5264 5264 Size: 5269 BlpI GC'TnA_GC Cuts at: 2686 2686 Size: 5269 Bme1580I G_kGCm'C Cuts at: 1790 2493 3330 4486 1790 Size: 703 837 1156 2573 Fragments arranged by size: 2573 1156 837 703 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5269 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3000 3958 442 Size: 416 53 83 399 24 1583 958 1753 Fragments arranged by size: 1753 1583 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5269 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2041 2041 Size: 5269 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2063 3929 1239 Size: 824 1866 2579 Fragments arranged by size: 2579 1866 824 Bpu10I CC'TnA_GC Cuts at: 2425 2425 Size: 5269 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3394 4259 4557 3394 Size: 865 298 4106 Fragments arranged by size: 4106 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3932 882 Size: 617 2433 2219 Fragments arranged by size: 2433 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3060 493 Size: 711 1856 2702 Fragments arranged by size: 2702 1856 711 BsaBI GATnn'nnATC Cuts at: 5263 5263 Size: 5269 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3076 3458 4093 275 Size: 53 83 186 936 1543 382 635 1451 Fragments arranged by size: 1543 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3702 4100 4374 4521 4932 3702 Size: 398 274 147 411 4039 Fragments arranged by size: 4039 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5044 Fragments arranged by size: 5044 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2017 1186 Size: 831 4438 BseYI C'CCAG_C Cuts at: 4472 4968 4472 Size: 496 4773 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4696 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2719 3480 4508 1540 Size: 275 186 718 761 1028 2301 Fragments arranged by size: 2301 1028 761 718 275 186 BsiHKAI G_wGCw'C Cuts at: 3330 3415 4486 3330 Size: 85 1071 4113 Fragments arranged by size: 4113 1071 85 BsmI GAATG_Cn' Cuts at: 2780 2873 2780 Size: 93 5176 BsmBI CGTCTCn'nnnn_ Cuts at: 2039 2039 Size: 5269 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2493 2588 3330 3415 4486 1391 Size: 399 703 95 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 703 399 95 85 BspEI T'CCGG_A Cuts at: 4932 4932 Size: 5269 BspHI T'CATG_A Cuts at: 3158 4888 3158 Size: 1730 3539 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2624 844 Size: 1780 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2203 3156 1394 Size: 429 380 953 3507 Fragments arranged by size: 3507 953 429 380 BsrDI GCAATG_nn' Cuts at: 65 1248 2412 3764 3938 65 Size: 1183 1164 1352 174 1396 Fragments arranged by size: 1396 1352 1183 1164 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3913 4100 1700 Size: 110 2103 187 2869 Fragments arranged by size: 2869 2103 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5269 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5269 BssSI C'ACGA_G Cuts at: 2029 3329 4341 2029 Size: 1300 1012 2957 Fragments arranged by size: 2957 1300 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5269 BstBI TT'CG_AA Cuts at: 4073 4073 Size: 5269 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5269 BstXI CCAn_nnnn'nTGG Cuts at: 2378 2378 Size: 5269 BstYI r'GATC_y Cuts at: 1972 2599 2966 3351 3368 4820 4906 4918 5264 Size: 627 367 385 17 1452 86 12 346 Cuts at: 5264 1972 Size: 1977 Fragments arranged by size: 1977 1452 627 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2295 513 Size: 552 1230 3487 Fragments arranged by size: 3487 1230 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4530 Fragments arranged by size: 4530 683 56 BtsI GCAGTG_nn' Cuts at: 2370 2785 3579 3599 2370 Size: 415 794 20 4040 Fragments arranged by size: 4040 794 415 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5269 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5234 DraI TTT'AAA Cuts at: 2478 2573 2478 Size: 95 5174 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4276 809 Size: 507 2960 1802 Fragments arranged by size: 2960 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2345 2716 3605 Size: 54 1425 50 275 18 515 371 889 Cuts at: 3605 5234 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 515 371 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2716 1537 Size: 275 904 4090 Fragments arranged by size: 4090 904 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2118 2511 3199 1353 Size: 765 393 688 3423 Fragments arranged by size: 3423 765 688 393 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2315 3856 4230 4376 387 Size: 1064 138 726 1541 374 146 1280 Fragments arranged by size: 1541 1280 1064 726 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2020 2063 3332 3929 4716 4984 1239 Size: 393 388 43 1269 597 787 268 1524 Fragments arranged by size: 1524 1269 787 597 393 388 268 43 EcoRI G'AATT_C Cuts at: 2578 2956 2578 Size: 378 4891 FspI TGC'GCA Cuts at: 3775 3775 Size: 5269 HaeII r_GCGC'y Cuts at: 1678 4416 1678 Size: 2738 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2165 2197 3910 3942 3984 Size: 32 135 32 593 32 1713 32 42 Cuts at: 3984 4016 1373 Size: 32 2626 Fragments arranged by size: 2626 1713 593 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2613 2859 669 Size: 988 281 675 246 3079 Fragments arranged by size: 3079 988 675 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5269 HpaI GTT'AAC Cuts at: 2859 2859 Size: 5269 KpnI G_GTAC'C Cuts at: 2594 2594 Size: 5269 MfeI C'AATT_G Cuts at: 2868 2868 Size: 5269 MluI A'CGCG_T Cuts at: 5145 5145 Size: 5269 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2586 4383 4567 1305 Size: 1281 1797 184 2007 Fragments arranged by size: 2007 1797 1281 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2347 10 Size: 54 1425 343 515 2932 Fragments arranged by size: 2932 1425 515 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2363 2417 3227 3586 3745 518 Size: 648 1197 54 810 359 159 2042 Fragments arranged by size: 2042 1197 810 648 359 159 54 MspA1I CmG'CkG Cuts at: 1606 2685 3362 4510 4755 1606 Size: 1079 677 1148 245 2120 Fragments arranged by size: 2120 1148 1079 677 245 NcoI C'CATG_G Cuts at: 513 1065 2295 513 Size: 552 1230 3487 Fragments arranged by size: 3487 1230 552 NdeI CA'TA_TG Cuts at: 387 2495 387 Size: 2108 3161 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5269 NotI GC'GGCC_GC Cuts at: 2716 2716 Size: 5269 NspI r_CATG'y Cuts at: 1132 1229 2627 4172 1132 Size: 97 1398 1545 2229 Fragments arranged by size: 2229 1545 1398 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5269 PciI A'CATG_T Cuts at: 4168 4168 Size: 5269 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5269 PmeI GTTT'AAAC Cuts at: 2573 2573 Size: 5269 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3338 3370 4851 4883 3338 Size: 32 1481 32 3724 Fragments arranged by size: 3724 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5269 PsiI TTA'TAA Cuts at: 2144 2839 2144 Size: 695 4574 PstI C_TGCA'G Cuts at: 830 2621 830 Size: 1791 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5269 SalI G'TCGA_C Cuts at: 1936 2611 1936 Size: 675 4594 SbfI CC_TGCA'GG Cuts at: 2621 2621 Size: 5269 ScaI AGT'ACT Cuts at: 3517 5229 3517 Size: 1712 3557 SfcI C'TryA_G Cuts at: 826 1045 2617 3752 4433 4624 826 Size: 219 1572 1135 681 191 1471 Fragments arranged by size: 1572 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5269 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5269 SmaI CCC'GGG Cuts at: 1872 2596 1872 Size: 724 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3373 4274 4536 820 Size: 197 926 1430 901 262 1553 Fragments arranged by size: 1553 1430 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3060 493 Size: 2567 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5269 SphI G_CATG'C Cuts at: 1132 2627 1132 Size: 1495 3774 SspI AAT'ATT Cuts at: 5 52 3193 5 Size: 47 3141 2081 Fragments arranged by size: 3141 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5269 StyI C'CwwG_G Cuts at: 513 1065 2295 2484 2708 513 Size: 552 1230 189 224 3074 Fragments arranged by size: 3074 1230 552 224 189 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3296 3313 3466 3651 4096 325 Size: 1255 1716 17 153 185 445 1498 Fragments arranged by size: 1716 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3515 5227 96 Size: 274 80 33 51 1443 1538 1712 138 Fragments arranged by size: 1712 1538 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5229 5261 5229 Size: 32 5237 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5269 XbaI T'CTAG_A Cuts at: 2605 2605 Size: 5269 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2011 2011 Size: 5269 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5269 XmaI C'CCGG_G Cuts at: 1870 2594 1870 Size: 724 4545 XmnI GAAnn'nnTTC Cuts at: 3398 3398 Size: 5269 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3077 276 Size: 53 83 186 936 1543 2468 Fragments arranged by size: 2468 1543 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI BsiWI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI