(Circular) (Six-base) MAPSORT of: pFN21AB6885.seq Check: 656 from: 1 to: 5245 pFN21AB6885 5245 bp With 182 enzymes: SgfI * October 20, 2009 10:43 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3055 278 Size: 53 83 186 936 1519 2468 Fragments arranged by size: 2468 1519 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2288 2588 1937 Size: 351 300 4594 Fragments arranged by size: 4594 351 300 Acc65I G'GTAC_C Cuts at: 2566 2566 Size: 5245 AclI AA'CG_TT Cuts at: 1563 3372 3745 1563 Size: 1809 373 3063 Fragments arranged by size: 3063 1809 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2143 3308 4692 4960 1632 Size: 511 1165 1384 268 1917 Fragments arranged by size: 1917 1384 1165 511 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5048 AflIII A'CryG_T Cuts at: 1203 2283 4144 5121 1203 Size: 1080 1861 977 1327 Fragments arranged by size: 1861 1327 1080 977 AgeI A'CCGG_T Cuts at: 4076 4076 Size: 5245 AhdI GACnn_n'nnGTC Cuts at: 3974 3974 Size: 5245 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5245 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2408 1184 Size: 1224 4021 AlwNI CAG_nnn'CTG Cuts at: 2380 2988 4560 2380 Size: 608 1572 3065 Fragments arranged by size: 3065 1572 608 ApaLI G'TGCA_C Cuts at: 3302 4458 3302 Size: 1156 4089 ApoI r'AATT_y Cuts at: 1493 2554 2780 2932 5041 1493 Size: 1061 226 152 2109 1697 Fragments arranged by size: 2109 1697 1061 226 152 AseI AT'TA_AT Cuts at: 160 1032 3799 160 Size: 872 2767 1606 Fragments arranged by size: 2767 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5245 AvaI C'yCGr_G Cuts at: 1870 1943 2441 2570 1870 Size: 73 498 129 4545 Fragments arranged by size: 4545 498 129 73 BamHI G'GATC_C Cuts at: 2575 2942 2575 Size: 367 4878 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2513 2566 4021 618 Size: 325 217 627 726 53 1455 1842 Fragments arranged by size: 1842 1455 726 627 325 217 53 BanII G_rGCy'C Cuts at: 1391 2442 2564 1391 Size: 1051 122 4072 Fragments arranged by size: 4072 1051 122 BbeI G_GCGC'C Cuts at: 2517 2517 Size: 5245 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4274 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2017 2051 3436 3470 1903 Size: 34 80 34 1385 34 3678 Fragments arranged by size: 3678 1385 80 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3137 4347 3137 Size: 1210 4035 BclI T'GATC_A Cuts at: 1548 1548 Size: 5245 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3856 136 Size: 107 122 71 631 605 2184 1525 Fragments arranged by size: 2184 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5240 5240 Size: 5245 BlpI GC'TnA_GC Cuts at: 2662 2662 Size: 5245 Bme1580I G_kGCm'C Cuts at: 1790 2413 3306 4462 1790 Size: 623 893 1156 2573 Fragments arranged by size: 2573 1156 893 623 BmgBI CAC'GTC Cuts at: 1318 2284 1318 Size: 966 4279 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2082 2976 3934 Size: 416 53 83 399 24 665 894 958 Cuts at: 3934 442 Size: 1753 Fragments arranged by size: 1753 958 894 665 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5245 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2111 2264 3905 1239 Size: 872 153 1641 2579 Fragments arranged by size: 2579 1641 872 153 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3370 4235 4533 3370 Size: 865 298 4082 Fragments arranged by size: 4082 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2087 3908 882 Size: 617 588 1821 2219 Fragments arranged by size: 2219 1821 617 588 BsaAI yAC'GTr Cuts at: 493 1204 2425 3036 493 Size: 711 1221 611 2702 Fragments arranged by size: 2702 1221 711 611 BsaBI GATnn'nnATC Cuts at: 5239 5239 Size: 5245 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2514 3052 3434 4069 Size: 53 83 186 936 981 538 382 635 Cuts at: 4069 275 Size: 1451 Fragments arranged by size: 1451 981 936 635 538 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2308 3678 4076 4350 4497 4908 2308 Size: 1370 398 274 147 411 2645 Fragments arranged by size: 2645 1370 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5020 Fragments arranged by size: 5020 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2222 1186 Size: 1036 4209 BseYI C'CCAG_C Cuts at: 2373 4448 4944 2373 Size: 2075 496 2674 Fragments arranged by size: 2674 2075 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4672 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2301 2695 3456 4484 1540 Size: 275 186 300 394 761 1028 2301 Fragments arranged by size: 2301 1028 761 394 300 275 186 BsiHKAI G_wGCw'C Cuts at: 2430 2442 3306 3391 4462 2430 Size: 12 864 85 1071 3213 Fragments arranged by size: 3213 1071 864 85 12 BsmI GAATG_Cn' Cuts at: 2756 2849 2756 Size: 93 5152 BsmBI CGTCTCn'nnnn_ Cuts at: 2240 2240 Size: 5245 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2413 2430 2442 2564 3306 3391 4462 Size: 399 623 17 12 122 742 85 1071 Cuts at: 4462 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 623 399 122 85 17 12 BspEI T'CCGG_A Cuts at: 2308 4908 2308 Size: 2600 2645 BspHI T'CATG_A Cuts at: 3134 4864 3134 Size: 1730 3515 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2600 844 Size: 1756 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3132 1394 Size: 429 1309 3507 Fragments arranged by size: 3507 1309 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2070 3740 3914 65 Size: 1183 822 1670 174 1396 Fragments arranged by size: 1670 1396 1183 822 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3889 4076 1700 Size: 110 2079 187 2869 Fragments arranged by size: 2869 2079 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5245 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5245 BssSI C'ACGA_G Cuts at: 2062 3305 4317 2062 Size: 1243 1012 2990 Fragments arranged by size: 2990 1243 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5245 BstBI TT'CG_AA Cuts at: 4049 4049 Size: 5245 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5245 BstYI r'GATC_y Cuts at: 1972 2575 2942 3327 3344 4796 4882 4894 5240 Size: 603 367 385 17 1452 86 12 346 Cuts at: 5240 1972 Size: 1977 Fragments arranged by size: 1977 1452 603 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2146 2194 2331 2506 513 Size: 552 939 142 48 137 175 3252 Fragments arranged by size: 3252 939 552 175 142 137 48 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4506 Fragments arranged by size: 4506 683 56 BtsI GCAGTG_nn' Cuts at: 2761 3555 3575 2761 Size: 794 20 4431 Fragments arranged by size: 4431 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5245 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5210 DraI TTT'AAA Cuts at: 2549 2549 Size: 5245 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4252 809 Size: 507 2936 1802 Fragments arranged by size: 2936 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2529 2692 3581 Size: 54 1425 50 275 18 699 163 889 Cuts at: 3581 5210 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 699 275 163 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2692 1537 Size: 275 880 4090 Fragments arranged by size: 4090 880 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3175 1353 Size: 1822 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3832 4206 4352 387 Size: 1064 138 2243 374 146 1280 Fragments arranged by size: 2243 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2440 2440 Size: 5245 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2111 2143 2264 3308 3905 4692 4960 Size: 393 479 32 121 1044 597 787 268 Cuts at: 4960 1239 Size: 1524 Fragments arranged by size: 1524 1044 787 597 479 393 268 121 32 EcoO109I rG'GnC_Cy Cuts at: 2389 2389 Size: 5245 EcoRI G'AATT_C Cuts at: 2554 2932 2554 Size: 378 4867 FspI TGC'GCA Cuts at: 2384 3751 2384 Size: 1367 3878 HaeII r_GCGC'y Cuts at: 1678 2380 2517 4392 1678 Size: 702 137 1875 2531 Fragments arranged by size: 2531 1875 702 137 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3886 3918 3960 3992 1373 Size: 32 135 32 2314 32 42 32 2626 Fragments arranged by size: 2626 2314 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2289 2589 2835 669 Size: 988 281 351 300 246 3079 Fragments arranged by size: 3079 988 351 300 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5245 HpaI GTT'AAC Cuts at: 2835 2835 Size: 5245 KasI G'GCGC_C Cuts at: 2513 2513 Size: 5245 KpnI G_GTAC'C Cuts at: 2570 2570 Size: 5245 MfeI C'AATT_G Cuts at: 2844 2844 Size: 5245 MluI A'CGCG_T Cuts at: 5121 5121 Size: 5245 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2321 4359 4543 1305 Size: 1016 2038 184 2007 Fragments arranged by size: 2038 2007 1016 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2531 10 Size: 54 1425 343 699 2724 Fragments arranged by size: 2724 1425 699 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3203 3562 3721 518 Size: 648 2037 359 159 2042 Fragments arranged by size: 2042 2037 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2148 2226 2661 3338 4486 4731 1606 Size: 542 78 435 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 542 435 245 78 NarI GG'CG_CC Cuts at: 2514 2514 Size: 5245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3754 Fragments arranged by size: 3754 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5245 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5245 NotI GC'GGCC_GC Cuts at: 2692 2692 Size: 5245 NspI r_CATG'y Cuts at: 1132 1229 2603 4148 1132 Size: 97 1374 1545 2229 Fragments arranged by size: 2229 1545 1374 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5245 PciI A'CATG_T Cuts at: 4144 4144 Size: 5245 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5245 PfoI T'CCnGG_A Cuts at: 2241 2241 Size: 5245 PmeI GTTT'AAAC Cuts at: 2549 2549 Size: 5245 PmlI CAC'GTG Cuts at: 2425 2425 Size: 5245 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3314 3346 4827 4859 3314 Size: 32 1481 32 3700 Fragments arranged by size: 3700 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5245 PsiI TTA'TAA Cuts at: 2815 2815 Size: 5245 PspXI vC'TCGA_Gb Cuts at: 2441 2441 Size: 5245 PstI C_TGCA'G Cuts at: 830 2597 830 Size: 1767 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5245 PvuII CAG'CTG Cuts at: 2226 2226 Size: 5245 SacI G_AGCT'C Cuts at: 2442 2442 Size: 5245 SacII CC_GC'GG Cuts at: 2149 2149 Size: 5245 SalI G'TCGA_C Cuts at: 1936 2287 2587 1936 Size: 351 300 4594 Fragments arranged by size: 4594 351 300 SbfI CC_TGCA'GG Cuts at: 2597 2597 Size: 5245 ScaI AGT'ACT Cuts at: 3493 5205 3493 Size: 1712 3533 SfcI C'TryA_G Cuts at: 826 1045 2593 3728 4409 4600 826 Size: 219 1548 1135 681 191 1471 Fragments arranged by size: 1548 1471 1135 681 219 191 SfoI GGC'GCC Cuts at: 2515 2515 Size: 5245 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5245 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5245 SmaI CCC'GGG Cuts at: 1872 2572 1872 Size: 700 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2441 3349 4250 4512 820 Size: 197 926 498 908 901 262 1553 Fragments arranged by size: 1553 926 908 901 498 262 197 SnaBI TAC'GTA Cuts at: 493 3036 493 Size: 2543 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5245 SphI G_CATG'C Cuts at: 1132 2603 1132 Size: 1471 3774 SspI AAT'ATT Cuts at: 5 52 3169 5 Size: 47 3117 2081 Fragments arranged by size: 3117 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5245 StyI C'CwwG_G Cuts at: 513 1065 2004 2433 2684 513 Size: 552 939 429 251 3074 Fragments arranged by size: 3074 939 552 429 251 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2387 2507 3272 3289 3442 3627 4072 Size: 1255 807 120 765 17 153 185 445 Cuts at: 4072 325 Size: 1498 Fragments arranged by size: 1498 1255 807 765 445 185 153 120 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3491 5203 96 Size: 274 80 33 51 1443 1514 1712 138 Fragments arranged by size: 1712 1514 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5205 5237 5205 Size: 32 5213 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5245 XbaI T'CTAG_A Cuts at: 2581 2581 Size: 5245 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2135 2329 2135 Size: 194 5051 XhoI C'TCGA_G Cuts at: 1943 2441 1943 Size: 498 4747 XmaI C'CCGG_G Cuts at: 1870 2570 1870 Size: 700 4545 XmnI GAAnn'nnTTC Cuts at: 3374 3374 Size: 5245 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3053 276 Size: 53 83 186 936 1519 2468 Fragments arranged by size: 2468 1519 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI PsiI PspXI PstI PvuI PvuII SacI SacII SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BstXI BstZ17I Bsu36I DraIII EcoNI EcoRV FalI FseI FspAI NaeI NgoMIV NruI NsiI PacI PpuMI PspOMI PsrI RsrII SanDI SapI SexAI SfiI SrfI SwaI