Result of FASTA (omim) for
pFN21AB6403
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6403, 304 aa
1>>>pF1KB6403 304 - 304 aa - 304 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8064+/-0.000362; mu= 14.5692+/- 0.023
mean_var=89.8515+/-19.024, 0's: 0 Z-trim(114.6): 167 B-trim: 2571 in 2/50
Lambda= 0.135304
statistics sampled from 24308 (24494) to 24308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.287), width: 16
Scan time: 7.130
The best scores are: opt bits E(85289)
NP_003012 (OMIM: 603419) small glutamine-rich tetr ( 313) 1123 229.0 9.2e-60
XP_011526480 (OMIM: 603419) PREDICTED: small gluta ( 313) 1123 229.0 9.2e-60
NP_001139547 (OMIM: 611477) RNA polymerase II-asso ( 631) 307 70.0 1.4e-11
NP_078880 (OMIM: 611477) RNA polymerase II-associa ( 665) 307 70.0 1.5e-11
NP_006810 (OMIM: 605063) stress-induced-phosphopro ( 543) 285 65.6 2.5e-10
NP_001269581 (OMIM: 605063) stress-induced-phospho ( 590) 283 65.3 3.5e-10
NP_001139548 (OMIM: 611477) RNA polymerase II-asso ( 506) 274 63.4 1e-09
NP_001191213 (OMIM: 600658) serine/threonine-prote ( 477) 266 61.9 2.9e-09
NP_006238 (OMIM: 600658) serine/threonine-protein ( 499) 266 61.9 3e-09
XP_016882424 (OMIM: 600658) PREDICTED: serine/thre ( 551) 266 61.9 3.3e-09
XP_011523470 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 261 60.9 5.4e-09
NP_001138238 (OMIM: 601964) dnaJ homolog subfamily ( 438) 261 60.9 5.4e-09
XP_016880483 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 261 60.9 5.4e-09
XP_011523471 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 261 60.9 5.4e-09
XP_011523469 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 261 60.9 5.4e-09
NP_001269582 (OMIM: 605063) stress-induced-phospho ( 519) 249 58.6 3.1e-08
NP_060338 (OMIM: 610732) tetratricopeptide repeat ( 705) 248 58.5 4.6e-08
XP_016873439 (OMIM: 610732) PREDICTED: tetratricop ( 753) 248 58.5 4.8e-08
XP_016873438 (OMIM: 610732) PREDICTED: tetratricop ( 755) 248 58.5 4.8e-08
XP_016873437 (OMIM: 610732) PREDICTED: tetratricop ( 760) 248 58.5 4.8e-08
XP_016873436 (OMIM: 610732) PREDICTED: tetratricop ( 774) 248 58.5 4.9e-08
XP_016873435 (OMIM: 610732) PREDICTED: tetratricop ( 777) 248 58.5 4.9e-08
XP_016873434 (OMIM: 610732) PREDICTED: tetratricop ( 777) 248 58.5 4.9e-08
XP_016873432 (OMIM: 610732) PREDICTED: tetratricop ( 777) 248 58.5 4.9e-08
XP_005271661 (OMIM: 610732) PREDICTED: tetratricop ( 777) 248 58.5 4.9e-08
XP_016873433 (OMIM: 610732) PREDICTED: tetratricop ( 777) 248 58.5 4.9e-08
NP_005852 (OMIM: 607207,615768) E3 ubiquitin-prote ( 303) 241 56.8 6.1e-08
NP_003306 (OMIM: 601964) dnaJ homolog subfamily C ( 494) 238 56.4 1.3e-07
XP_005260311 (OMIM: 616049) PREDICTED: mitochondri ( 207) 219 52.4 8.8e-07
NP_001305462 (OMIM: 610732) tetratricopeptide repe ( 711) 226 54.2 9e-07
NP_001295210 (OMIM: 611220,616279) protein unc-45 ( 850) 226 54.2 1e-06
XP_016879723 (OMIM: 611220,616279) PREDICTED: prot ( 850) 226 54.2 1e-06
NP_001253981 (OMIM: 611220,616279) protein unc-45 ( 929) 226 54.3 1.1e-06
NP_001028748 (OMIM: 611220,616279) protein unc-45 ( 929) 226 54.3 1.1e-06
NP_775259 (OMIM: 611220,616279) protein unc-45 hom ( 931) 226 54.3 1.1e-06
XP_011526803 (OMIM: 616049) PREDICTED: mitochondri ( 283) 219 52.5 1.1e-06
NP_006800 (OMIM: 616049) mitochondrial import rece ( 309) 219 52.6 1.2e-06
XP_011515547 (OMIM: 603395,615505) PREDICTED: sper ( 487) 220 52.9 1.5e-06
NP_001278262 (OMIM: 606753) tetratricopeptide repe ( 288) 215 51.8 2e-06
XP_011515543 (OMIM: 603395,615505) PREDICTED: sper ( 871) 220 53.1 2.4e-06
NP_004614 (OMIM: 606753) tetratricopeptide repeat ( 387) 215 51.8 2.5e-06
NP_001269429 (OMIM: 601963) tetratricopeptide repe ( 292) 207 50.2 5.9e-06
NP_003305 (OMIM: 601963) tetratricopeptide repeat ( 292) 207 50.2 5.9e-06
NP_061141 (OMIM: 611219) protein unc-45 homolog A ( 944) 213 51.7 6.5e-06
NP_001310548 (OMIM: 611219) protein unc-45 homolog ( 944) 213 51.7 6.5e-06
XP_011520081 (OMIM: 611219) PREDICTED: protein unc ( 944) 213 51.7 6.5e-06
NP_001034764 (OMIM: 611219) protein unc-45 homolog ( 929) 212 51.5 7.4e-06
NP_001310550 (OMIM: 611219) protein unc-45 homolog ( 929) 212 51.5 7.4e-06
NP_570722 (OMIM: 127700,608706,615482) dyslexia su ( 420) 207 50.3 7.8e-06
NP_055635 (OMIM: 606081) mitochondrial import rece ( 608) 204 49.8 1.6e-05
>>NP_003012 (OMIM: 603419) small glutamine-rich tetratri (313 aa)
initn: 1152 init1: 736 opt: 1123 Z-score: 1193.9 bits: 229.0 E(85289): 9.2e-60
Smith-Waterman score: 1123; 58.3% identity (81.4% similar) in 312 aa overlap (1-303:1-311)
10 20 30 40 50 60
pF1KB6 MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE
:.. :.:.::.:.::..: . .:: :::::::::::::.: .. ::. ::. : : :
NP_003 MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 MF----TSSFCKNDVLPLSNSVP--EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIEL
.: :.. .:. . . : :: ..:..:: :::..:: ::. ::: : .::::
NP_003 IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 DPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVT
.: ::::.:::::: ::::.:. :..:::.:: :: ::::::::::::..::: :::.
NP_003 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 SYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQN
:.:::.:::.:..::::::::: ::::. :::: :::.:.:.:::.:.:::..::.:
NP_003 YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 PQVQQLMSGMMT---NAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHI
::.:::::::.. : .: :... . .::.::::::::::::.::::::::::::..:
NP_003 PQIQQLMSGMISGGNNPLGTPGTS-PSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQI
250 260 270 280 290
300
pF1KB6 RSRSFSSSAEEHS
:::. :.: ...
NP_003 RSRTPSASNDDQQE
300 310
>>XP_011526480 (OMIM: 603419) PREDICTED: small glutamine (313 aa)
initn: 1152 init1: 736 opt: 1123 Z-score: 1193.9 bits: 229.0 E(85289): 9.2e-60
Smith-Waterman score: 1123; 58.3% identity (81.4% similar) in 312 aa overlap (1-303:1-311)
10 20 30 40 50 60
pF1KB6 MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTE
:.. :.:.::.:.::..: . .:: :::::::::::::.: .. ::. ::. : : :
XP_011 MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPE
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 MF----TSSFCKNDVLPLSNSVP--EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIEL
.: :.. .:. . . : :: ..:..:: :::..:: ::. ::: : .::::
XP_011 IFEAAATGKEMPQDLRSPARTPPSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 DPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVT
.: ::::.:::::: ::::.:. :..:::.:: :: ::::::::::::..::: :::.
XP_011 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 SYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQN
:.:::.:::.:..::::::::: ::::. :::: :::.:.:.:::.:.:::..::.:
XP_011 YYKKALELDPDNETYKSNLKIAELKLREAPSPTGGVGSFDIAGLLNNPGFMSMASNLMNN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 PQVQQLMSGMMT---NAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHI
::.:::::::.. : .: :... . .::.::::::::::::.::::::::::::..:
XP_011 PQIQQLMSGMISGGNNPLGTPGTS-PSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQI
250 260 270 280 290
300
pF1KB6 RSRSFSSSAEEHS
:::. :.: ...
XP_011 RSRTPSASNDDQQE
300 310
>>NP_001139547 (OMIM: 611477) RNA polymerase II-associat (631 aa)
initn: 350 init1: 291 opt: 307 Z-score: 328.7 bits: 70.0 E(85289): 1.4e-11
Smith-Waterman score: 307; 39.1% identity (69.9% similar) in 133 aa overlap (76-206:124-256)
50 60 70 80 90 100
pF1KB6 SPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAV
... : :: ::..::...:. .: :.
NP_001 AKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGKYDEAI
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB6 DCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTA
::::.... :: : : :::.: .: ... : .::. :.:.. .:.:::.: : : :
NP_001 DCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFA
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB6 LNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPA
:.:.::: .:...:.:.:.: ..:. : : .: : :
NP_001 LQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQI
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB6 FISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPEL
NP_001 EAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYE
280 290 300 310 320 330
>--
initn: 291 init1: 272 opt: 286 Z-score: 306.6 bits: 65.9 E(85289): 2.4e-10
Smith-Waterman score: 286; 34.4% identity (61.4% similar) in 215 aa overlap (89-286:286-498)
60 70 80 90 100 110
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
::.::. .:: .: :..:::..: : :
NP_001 PKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGAN
260 270 280 290 300 310
120 130 140 150 160 170
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
:. ::: : :. .: .: ::: .:: .:..::::..: : : : :.:..:: ...
NP_001 ALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFET
320 330 340 350 360 370
180 190 200 210 220
pF1KB6 ALDLDPENDSYKSNL-KIAEQKLREVS-SPTGTGL-SFDM------ASLINNPAFISMAA
.: :.: : . ..: :: .. :..: ::. . ..:. :. ::: :..:
NP_001 VLLLEPGNKQAVTELSKIKKKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNP--INLAN
380 390 400 410 420 430
230 240 250 260 270 280
pF1KB6 SLMQNPQVQQLMSGM--MTNAIGGPAAGVGGL---TDLSSLI-QAG--QQFAQQIQQQNP
. . ... :.. . . : : : . .: ::: ::. :. :. ... :
NP_001 VIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIEEVSDTSSLQPQASLKQDVCQSYSEKMP
440 450 460 470 480 490
290 300
pF1KB6 ELIEQLRNHIRSRSFSSSAEEHS
:::
NP_001 IEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPSLYPKLFQKNLD
500 510 520 530 540 550
>>NP_078880 (OMIM: 611477) RNA polymerase II-associated (665 aa)
initn: 602 init1: 291 opt: 307 Z-score: 328.4 bits: 70.0 E(85289): 1.5e-11
Smith-Waterman score: 307; 39.1% identity (69.9% similar) in 133 aa overlap (76-206:124-256)
50 60 70 80 90 100
pF1KB6 SPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAV
... : :: ::..::...:. .: :.
NP_078 AKLDVDRILDELDKDDSTHESLSQESESEEDGIHVDSQKALVLKEKGNKYFKQGKYDEAI
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB6 DCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTA
::::.... :: : : :::.: .: ... : .::. :.:.. .:.:::.: : : :
NP_078 DCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFA
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB6 LNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPA
:.:.::: .:...:.:.:.: ..:. : : .: : :
NP_078 LQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGERKQI
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB6 FISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPEL
NP_078 EAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYE
280 290 300 310 320 330
>--
initn: 353 init1: 266 opt: 274 Z-score: 293.6 bits: 63.5 E(85289): 1.3e-09
Smith-Waterman score: 274; 41.2% identity (70.2% similar) in 114 aa overlap (89-202:286-399)
60 70 80 90 100 110
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
::.::. .:: .: :..:::..: : :
NP_078 PKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGAN
260 270 280 290 300 310
120 130 140 150 160 170
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
:. ::: : :. .: .: ::: .:: .:..::::..: : : : :.:..:: ...
NP_078 ALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFET
320 330 340 350 360 370
180 190 200 210 220 230
pF1KB6 ALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISMAASLMQNPQVQ
.: :.: : . ..:. ...: :
NP_078 VLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKV
380 390 400 410 420 430
>>NP_006810 (OMIM: 605063) stress-induced-phosphoprotein (543 aa)
initn: 314 init1: 275 opt: 285 Z-score: 306.4 bits: 65.6 E(85289): 2.5e-10
Smith-Waterman score: 285; 32.5% identity (64.4% similar) in 160 aa overlap (84-241:3-156)
60 70 80 90 100 110
pF1KB6 VSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIE
....::..::. .. : :..::..::.
NP_006 MEQVNELKEKGNKALSVGNIDDALQCYSEAIK
10 20 30
120 130 140 150 160 170
pF1KB6 LDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAV
:::.: : : ::.:: .: : : : .: :.. . ..:.:.: . :: ::.::::
NP_006 LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB6 TSYQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASL
.:...: . .: . : .:. : .: :. .: :.: .: .. . .:
NP_006 RTYEEGLKHEANNPQLKEGLQNMEARLAERKFMNP------FNMPNLYQKLESDPRTRTL
100 110 120 130 140
240 250 260 270 280 290
pF1KB6 MQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHI
...: ..:.
NP_006 LSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPK
150 160 170 180 190 200
>--
initn: 282 init1: 243 opt: 249 Z-score: 268.5 bits: 58.6 E(85289): 3.2e-08
Smith-Waterman score: 249; 30.5% identity (63.0% similar) in 154 aa overlap (89-236:364-516)
60 70 80 90 100 110
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
:..::. ... .: :. ::.::. .:..
NP_006 DVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD
340 350 360 370 380 390
120 130 140 150 160 170
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
: : :::: .:: .. :.::::. : .. . :.: : . :: :.. . .:. :::
NP_006 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK
400 410 420 430 440 450
180 190 200 210 220 230
pF1KB6 ALDLDPE----NDSYKSNLKIAEQKLREVSSPTGTGLSFD--MASLINNPAFISMAASLM
::::: :.:. . .:. . .. . : . .....::. . ...
NP_006 ALDLDSSCKEAADGYQRCM-MAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQ
460 470 480 490 500 510
240 250 260 270 280 290
pF1KB6 QNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIR
..::
NP_006 KDPQALSEHLKNPVIAQKIQKLMDVGLIAIR
520 530 540
>--
initn: 170 init1: 157 opt: 218 Z-score: 235.8 bits: 52.5 E(85289): 2.2e-06
Smith-Waterman score: 218; 31.4% identity (61.3% similar) in 137 aa overlap (73-202:213-348)
50 60 70 80 90 100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYA
:. ...::. .: . :. ::. .:....
NP_006 LGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFD
190 200 210 220 230 240
110 120 130 140 150
pF1KB6 AAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDS-------KYSKA
.:. : .: ::::.: .: :.::. . : :. . ::::: . . .::
NP_006 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA
250 260 270 280 290 300
160 170 180 190 200 210
pF1KB6 YGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDM
:.:.: . .:...:. :.:.: : :. . ::. :.:
NP_006 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ-AEKILKEQERLAYINPDLAL
310 320 330 340 350 360
220 230 240 250 260 270
pF1KB6 ASLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQ
NP_006 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI
370 380 390 400 410 420
>>NP_001269581 (OMIM: 605063) stress-induced-phosphoprot (590 aa)
initn: 312 init1: 273 opt: 283 Z-score: 303.8 bits: 65.3 E(85289): 3.5e-10
Smith-Waterman score: 283; 32.9% identity (63.9% similar) in 158 aa overlap (86-241:52-203)
60 70 80 90 100 110
pF1KB6 QPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELD
..::..::. .. : :..::..::.::
NP_001 GQRGYDWQCKRPIRVAEVRSSLHSWSLRWVNELKEKGNKALSVGNIDDALQCYSEAIKLD
30 40 50 60 70 80
120 130 140 150 160 170
pF1KB6 PNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTS
:.: : : ::.:: .: : : : .: :.. . ..:.:.: . :: ::.:::: .
NP_001 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB6 YQKALDLDPENDSYKSNLKIAEQKL--REVSSPTGTGLSFDMASLINNPAFISMAASLMQ
:...: . .: . : .:. : .: :. .: :.: .: .. . .:..
NP_001 YEEGLKHEANNPQLKEGLQNMEARLAERKFMNP------FNMPNLYQKLESDPRTRTLLS
150 160 170 180 190
240 250 260 270 280 290
pF1KB6 NPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIRS
.: ..:.
NP_001 DPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEEEIATPPPPPPPKKE
200 210 220 230 240 250
>--
initn: 282 init1: 243 opt: 249 Z-score: 268.0 bits: 58.6 E(85289): 3.5e-08
Smith-Waterman score: 249; 30.5% identity (63.0% similar) in 154 aa overlap (89-236:411-563)
60 70 80 90 100 110
pF1KB6 TEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN
:..::. ... .: :. ::.::. .:..
NP_001 DVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD
390 400 410 420 430 440
120 130 140 150 160 170
pF1KB6 AVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQK
: : :::: .:: .. :.::::. : .. . :.: : . :: :.. . .:. :::
NP_001 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQK
450 460 470 480 490 500
180 190 200 210 220 230
pF1KB6 ALDLDPE----NDSYKSNLKIAEQKLREVSSPTGTGLSFD--MASLINNPAFISMAASLM
::::: :.:. . .:. . .. . : . .....::. . ...
NP_001 ALDLDSSCKEAADGYQRCM-MAQYNRHDSPEDVKRRAMADPEVQQIMSDPAMRLILEQMQ
510 520 530 540 550
240 250 260 270 280 290
pF1KB6 QNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQLRNHIR
..::
NP_001 KDPQALSEHLKNPVIAQKIQKLMDVGLIAIR
560 570 580 590
>--
initn: 170 init1: 157 opt: 218 Z-score: 235.3 bits: 52.6 E(85289): 2.3e-06
Smith-Waterman score: 218; 31.4% identity (61.3% similar) in 137 aa overlap (73-202:260-395)
50 60 70 80 90 100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGNNHMKEENYA
:. ...::. .: . :. ::. .:....
NP_001 LGVDLGSMDEEEEIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFD
230 240 250 260 270 280
110 120 130 140 150
pF1KB6 AAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDS-------KYSKA
.:. : .: ::::.: .: :.::. . : :. . ::::: . . .::
NP_001 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA
290 300 310 320 330 340
160 170 180 190 200 210
pF1KB6 YGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDM
:.:.: . .:...:. :.:.: : :. . ::. :.:
NP_001 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ-AEKILKEQERLAYINPDLAL
350 360 370 380 390 400
220 230 240 250 260 270
pF1KB6 ASLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQ
NP_001 EEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI
410 420 430 440 450 460
>>NP_001139548 (OMIM: 611477) RNA polymerase II-associat (506 aa)
initn: 451 init1: 266 opt: 274 Z-score: 295.3 bits: 63.4 E(85289): 1e-09
Smith-Waterman score: 279; 32.4% identity (62.2% similar) in 185 aa overlap (30-202:56-240)
10 20 30 40 50
pF1KB6 MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLA-----V
..:: : . : :... :.. . . .
NP_001 VAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKI
30 40 50 60 70 80
60 70 80 90 100
pF1KB6 SQPLTEMFTSSFCKNDVLPLSNS-------VPEDVGKADQLKDEGNNHMKEENYAAAVDC
:: :. .: . :.. :. . .. .: . ::.::. .:: .: :..:
NP_001 SQALASKENSYPKEADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIEC
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB6 YTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALN
::..: : ::. ::: : :. .: .: ::: .:: .:..::::..: : : : :.
NP_001 YTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLG
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB6 KFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSSPTGTGLSFDMASLINNPAFISM
:..:: ... .: :.: : . ..:. ...: :
NP_001 KLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPP
210 220 230 240 250 260
230 240 250 260 270 280
pF1KB6 AASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQIQQQNPELIEQL
NP_001 HPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNPINLANVIAATGTTSKKNSSQDD
270 280 290 300 310 320
>>NP_001191213 (OMIM: 600658) serine/threonine-protein p (477 aa)
initn: 254 init1: 254 opt: 266 Z-score: 287.2 bits: 61.9 E(85289): 2.9e-09
Smith-Waterman score: 266; 35.3% identity (64.7% similar) in 136 aa overlap (73-202:14-149)
50 60 70 80 90 100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPED--VGKADQLKDEGNNHMKEEN
: . : : . .:..:: ..:...: ..
NP_001 MAMAEGERTECAEPPRDEPPADGALKRAEELKTQANDYFKAKD
10 20 30 40
110 120 130 140 150 160
pF1KB6 YAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMG
: :. :.:::::.:.::.:: ::. : . : :. : .:: .:.:: :.: : .
NP_001 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA
50 60 70 80 90 100
170 180 190 200 210
pF1KB6 LALTALNKFEEAVTSYQKALDLDPENDS----YKSNLKIAEQKLREVSSPTGTGLSFDMA
. ::.::. :. .:. .. . :.. . :. ::..:: :
NP_001 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB6 SLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQI
NP_001 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQTEKITVCGDTHG
170 180 190 200 210 220
>>NP_006238 (OMIM: 600658) serine/threonine-protein phos (499 aa)
initn: 254 init1: 254 opt: 266 Z-score: 286.9 bits: 61.9 E(85289): 3e-09
Smith-Waterman score: 266; 35.3% identity (64.7% similar) in 136 aa overlap (73-202:14-149)
50 60 70 80 90 100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPED--VGKADQLKDEGNNHMKEEN
: . : : . .:..:: ..:...: ..
NP_006 MAMAEGERTECAEPPRDEPPADGALKRAEELKTQANDYFKAKD
10 20 30 40
110 120 130 140 150 160
pF1KB6 YAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMG
: :. :.:::::.:.::.:: ::. : . : :. : .:: .:.:: :.: : .
NP_006 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA
50 60 70 80 90 100
170 180 190 200 210
pF1KB6 LALTALNKFEEAVTSYQKALDLDPENDS----YKSNLKIAEQKLREVSSPTGTGLSFDMA
. ::.::. :. .:. .. . :.. . :. ::..:: :
NP_006 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB6 SLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQI
NP_006 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL
170 180 190 200 210 220
>>XP_016882424 (OMIM: 600658) PREDICTED: serine/threonin (551 aa)
initn: 254 init1: 254 opt: 266 Z-score: 286.3 bits: 61.9 E(85289): 3.3e-09
Smith-Waterman score: 266; 35.3% identity (64.7% similar) in 136 aa overlap (73-202:14-149)
50 60 70 80 90 100
pF1KB6 FKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPED--VGKADQLKDEGNNHMKEEN
: . : : . .:..:: ..:...: ..
XP_016 MAMAEGERTECAEPPRDEPPADGALKRAEELKTQANDYFKAKD
10 20 30 40
110 120 130 140 150 160
pF1KB6 YAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMG
: :. :.:::::.:.::.:: ::. : . : :. : .:: .:.:: :.: : .
XP_016 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA
50 60 70 80 90 100
170 180 190 200 210
pF1KB6 LALTALNKFEEAVTSYQKALDLDPENDS----YKSNLKIAEQKLREVSSPTGTGLSFDMA
. ::.::. :. .:. .. . :.. . :. ::..:: :
XP_016 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB6 SLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSLIQAGQQFAQQI
XP_016 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL
170 180 190 200 210 220
304 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:04:49 2016 done: Fri Nov 4 17:04:50 2016
Total Scan time: 7.130 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]