Result of FASTA (omim) for
pFN21AB6306
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6306, 280 aa
1>>>pF1KB6306 280 - 280 aa - 280 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2809+/-0.000486; mu= 13.8781+/- 0.030
mean_var=327.5925+/-75.853, 0's: 0 Z-trim(117.0): 329 B-trim: 1358 in 1/53
Lambda= 0.070861
statistics sampled from 28233 (28653) to 28233 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.336), width: 16
Scan time: 5.270
The best scores are: opt bits E(85289)
NP_004459 (OMIM: 602790) four and a half LIM domai ( 280) 2147 233.1 4.5e-61
NP_001230807 (OMIM: 602790) four and a half LIM do ( 172) 1326 148.8 6.6e-36
XP_011509100 (OMIM: 602633) PREDICTED: four and a ( 279) 1301 146.6 4.8e-35
NP_001305825 (OMIM: 602633) four and a half LIM do ( 279) 1301 146.6 4.8e-35
NP_001441 (OMIM: 602633) four and a half LIM domai ( 279) 1301 146.6 4.8e-35
NP_963851 (OMIM: 602633) four and a half LIM domai ( 279) 1301 146.6 4.8e-35
NP_001305823 (OMIM: 602633) four and a half LIM do ( 279) 1301 146.6 4.8e-35
NP_001034581 (OMIM: 602633) four and a half LIM do ( 279) 1301 146.6 4.8e-35
NP_001305824 (OMIM: 602633) four and a half LIM do ( 279) 1301 146.6 4.8e-35
NP_963849 (OMIM: 602633) four and a half LIM domai ( 279) 1301 146.6 4.8e-35
NP_001309395 (OMIM: 605126) four and a half LIM do ( 284) 1180 134.3 2.6e-31
NP_001309396 (OMIM: 605126) four and a half LIM do ( 284) 1180 134.3 2.6e-31
NP_065228 (OMIM: 605126) four and a half LIM domai ( 284) 1180 134.3 2.6e-31
NP_001164278 (OMIM: 605126) four and a half LIM do ( 284) 1180 134.3 2.6e-31
NP_001161291 (OMIM: 300163,300695,300696,300717,30 ( 280) 1037 119.6 6.4e-27
XP_006724810 (OMIM: 300163,300695,300696,300717,30 ( 280) 1037 119.6 6.4e-27
NP_001153176 (OMIM: 300163,300695,300696,300717,30 ( 280) 1037 119.6 6.4e-27
NP_001153172 (OMIM: 300163,300695,300696,300717,30 ( 280) 1037 119.6 6.4e-27
NP_001440 (OMIM: 300163,300695,300696,300717,30071 ( 280) 1037 119.6 6.4e-27
XP_016884846 (OMIM: 300163,300695,300696,300717,30 ( 280) 1037 119.6 6.4e-27
NP_001153171 (OMIM: 300163,300695,300696,300717,30 ( 296) 1037 119.7 6.6e-27
NP_001153173 (OMIM: 300163,300695,300696,300717,30 ( 309) 1037 119.7 6.7e-27
XP_006724807 (OMIM: 300163,300695,300696,300717,30 ( 323) 892 104.9 2e-22
NP_001153174 (OMIM: 300163,300695,300696,300717,30 ( 323) 892 104.9 2e-22
XP_006724808 (OMIM: 300163,300695,300696,300717,30 ( 323) 892 104.9 2e-22
XP_006724809 (OMIM: 300163,300695,300696,300717,30 ( 323) 892 104.9 2e-22
XP_006724806 (OMIM: 300163,300695,300696,300717,30 ( 339) 892 105.0 2e-22
XP_016856164 (OMIM: 602790) PREDICTED: four and a ( 147) 868 101.8 7.7e-22
NP_001305828 (OMIM: 602633) four and a half LIM do ( 171) 825 97.6 1.7e-20
NP_001305827 (OMIM: 602633) four and a half LIM do ( 165) 785 93.5 2.9e-19
NP_001305826 (OMIM: 602633) four and a half LIM do ( 165) 785 93.5 2.9e-19
NP_001153175 (OMIM: 300163,300695,300696,300717,30 ( 194) 632 77.9 1.6e-14
NP_001317588 (OMIM: 300163,300695,300696,300717,30 ( 210) 632 78.0 1.7e-14
XP_005264007 (OMIM: 602567) PREDICTED: LIM and sen ( 336) 456 60.4 5.3e-09
XP_005264008 (OMIM: 602567) PREDICTED: LIM and sen ( 336) 456 60.4 5.3e-09
XP_005264006 (OMIM: 602567) PREDICTED: LIM and sen ( 348) 456 60.4 5.4e-09
XP_005264005 (OMIM: 602567) PREDICTED: LIM and sen ( 373) 456 60.5 5.6e-09
NP_001180417 (OMIM: 602567) LIM and senescent cell ( 325) 455 60.3 5.6e-09
NP_004978 (OMIM: 602567) LIM and senescent cell an ( 325) 455 60.3 5.6e-09
NP_001180411 (OMIM: 602567) LIM and senescent cell ( 329) 455 60.3 5.6e-09
NP_001180412 (OMIM: 602567) LIM and senescent cell ( 337) 455 60.3 5.7e-09
XP_005264003 (OMIM: 602567) PREDICTED: LIM and sen ( 398) 456 60.5 5.7e-09
NP_001180413 (OMIM: 602567) LIM and senescent cell ( 362) 455 60.3 5.9e-09
NP_001180414 (OMIM: 602567) LIM and senescent cell ( 387) 455 60.4 6.1e-09
NP_001243354 (OMIM: 605904) PDZ and LIM domain pro ( 271) 438 58.4 1.7e-08
XP_006718813 (OMIM: 605390) PREDICTED: leupaxin is ( 290) 436 58.2 2.1e-08
XP_011537496 (OMIM: 605906,609452) PREDICTED: LIM ( 400) 438 58.7 2.1e-08
XP_011537495 (OMIM: 605906,609452) PREDICTED: LIM ( 463) 438 58.8 2.2e-08
XP_016871096 (OMIM: 605906,609452) PREDICTED: LIM ( 463) 438 58.8 2.2e-08
NP_001243357 (OMIM: 605904) PDZ and LIM domain pro ( 474) 438 58.8 2.2e-08
>>NP_004459 (OMIM: 602790) four and a half LIM domains p (280 aa)
initn: 2147 init1: 2147 opt: 2147 Z-score: 1217.5 bits: 233.1 E(85289): 4.5e-61
Smith-Waterman score: 2147; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
::::::::::::::::::::::::::::::::::::::::
NP_004 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
250 260 270 280
>>NP_001230807 (OMIM: 602790) four and a half LIM domain (172 aa)
initn: 1326 init1: 1326 opt: 1326 Z-score: 765.6 bits: 148.8 E(85289): 6.6e-36
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 172 aa overlap (109-280:1-172)
80 90 100 110 120 130
pF1KB6 PFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGS
::::::::::::::::::::::::::::::
NP_001 MPGSRKLEYGGQTWHEHCFLCSGCEQPLGS
10 20 30
140 150 160 170 180 190
pF1KB6 RSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQ
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 QFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFEDRHWHHNCFSCARCSTSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFEDRHWHHNCFSCARCSTSL
100 110 120 130 140 150
260 270 280
pF1KB6 VGQGFVPDGDQVLCQGCSQAGP
::::::::::::::::::::::
NP_001 VGQGFVPDGDQVLCQGCSQAGP
160 170
>>XP_011509100 (OMIM: 602633) PREDICTED: four and a half (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
XP_011 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
XP_011 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
XP_011 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
XP_011 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
XP_011 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001305825 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001441 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_963851 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
NP_963 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
NP_963 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
NP_963 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
NP_963 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
NP_963 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001305823 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001034581 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_001305824 (OMIM: 602633) four and a half LIM domain (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
NP_001 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
NP_001 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
NP_001 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
NP_001 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
NP_001 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
>>NP_963849 (OMIM: 602633) four and a half LIM domains p (279 aa)
initn: 1679 init1: 1287 opt: 1301 Z-score: 750.1 bits: 146.6 E(85289): 4.8e-35
Smith-Waterman score: 1301; 53.8% identity (82.7% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB6 MSESFDCAKCNESLYGRKYIQTDSGPYCVPCYDNTFANTCAECQQLIGHDSRELFYEDRH
:.: ::: .:::::.:.::: . .:::: :... ::::: :: . :: : ..: :.:::
NP_963 MTERFDCHHCNESLFGKKYILREESPYCVVCFETLFANTCEECGKPIGCDCKDLSYKDRH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMPGSRKLEYGGQ
.::.::.: .:. ::.:.::. ....:::.::: . .::.:. : .:.:::.::.:: :.
NP_963 WHEACFHCSQCRNSLVDKPFAAKEDQLLCTDCYSNEYSSKCQECKKTIMPGTRKMEYKGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQP
.::: ::.: :.::.:..::.: . ..::::::.. : .:..:.: .: ::::::.::
NP_963 SWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAMQCVQCKKPITTGGVTYREQP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAPKCSSCKRPIVGLGGGKYVSFE
::.::.:::.:. :.::.::.::. ::. :: .:.: ::..: :: :::: ::.:::
NP_963 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAKKCAGCTNPISGLGGTKYISFE
190 200 210 220 230 240
250 260 270 280
pF1KB6 DRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGCSQAGP
.:.::..::.: .:: ::::.::. . :..:: :..
NP_963 ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI
250 260 270
280 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:35:24 2016 done: Fri Nov 4 19:35:25 2016
Total Scan time: 5.270 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]