Result of FASTA (omim) for
pFN21AB3876
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3876, 165 aa
1>>>pF1KB3876 165 - 165 aa - 165 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0824+/-0.00028; mu= 9.9381+/- 0.018
mean_var=96.0997+/-19.491, 0's: 0 Z-trim(120.5): 5 B-trim: 764 in 1/55
Lambda= 0.130832
statistics sampled from 35783 (35788) to 35783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.42), width: 16
Scan time: 5.760
The best scores are: opt bits E(85289)
NP_001005 (OMIM: 603632,613308) 40S ribosomal prot ( 165) 1134 223.1 1.6e-58
NP_001190174 (OMIM: 603632,613308) 40S ribosomal p ( 165) 1134 223.1 1.6e-58
NP_001191020 (OMIM: 603632,613308) 40S ribosomal p ( 165) 1134 223.1 1.6e-58
NP_958782 (OMIM: 131950,226670,226730,601282,61213 (4684) 416 88.6 1.4e-16
XP_005251033 (OMIM: 131950,226670,226730,601282,61 (4689) 416 88.6 1.4e-16
>>NP_001005 (OMIM: 603632,613308) 40S ribosomal protein (165 aa)
initn: 1134 init1: 1134 opt: 1134 Z-score: 1171.7 bits: 223.1 E(85289): 1.6e-58
Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG
70 80 90 100 110 120
130 140 150 160
pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
130 140 150 160
>>NP_001190174 (OMIM: 603632,613308) 40S ribosomal prote (165 aa)
initn: 1134 init1: 1134 opt: 1134 Z-score: 1171.7 bits: 223.1 E(85289): 1.6e-58
Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG
70 80 90 100 110 120
130 140 150 160
pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
130 140 150 160
>>NP_001191020 (OMIM: 603632,613308) 40S ribosomal prote (165 aa)
initn: 1134 init1: 1134 opt: 1134 Z-score: 1171.7 bits: 223.1 E(85289): 1.6e-58
Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165)
10 20 30 40 50 60
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG
:::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
NP_001 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG
70 80 90 100 110 120
130 140 150 160
pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
130 140 150 160
>>NP_958782 (OMIM: 131950,226670,226730,601282,612138,61 (4684 aa)
initn: 403 init1: 296 opt: 416 Z-score: 418.6 bits: 88.6 E(85289): 1.4e-16
Smith-Waterman score: 419; 51.8% identity (70.2% similar) in 141 aa overlap (1-129:5-142)
10 20 30 40 50
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKS
::::. . ::::.::.::::::::: . :. ::.. .: ::.::.:: ::..
NP_958 MVAGMLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRA
10 20 30 40 50
60 70 80 90 100
pF1KB3 RGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSR-------PETGRPRPK
:: :.: ::: ::::::::::: .::.::::::::::: :.: : : :. .
NP_958 RGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB3 GLEGERPARLTRGE---ADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPP
...: . :: .. .:::
NP_958 AVQGPLGSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQRTLARPGPEPAPATDER
120 130 140 150 160 170
>>XP_005251033 (OMIM: 131950,226670,226730,601282,612138 (4689 aa)
initn: 403 init1: 296 opt: 416 Z-score: 418.5 bits: 88.6 E(85289): 1.4e-16
Smith-Waterman score: 419; 51.8% identity (70.2% similar) in 141 aa overlap (1-129:5-142)
10 20 30 40 50
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKS
::::. . ::::.::.::::::::: . :. ::.. .: ::.::.:: ::..
XP_005 MVAGMLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRA
10 20 30 40 50
60 70 80 90 100
pF1KB3 RGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSR-------PETGRPRPK
:: :.: ::: ::::::::::: .::.::::::::::: :.: : : :. .
XP_005 RGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB3 GLEGERPARLTRGE---ADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPP
...: . :: .. .:::
XP_005 AVQGPLGSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQRTLARPGPEPAPATDER
120 130 140 150 160 170
165 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:53:43 2016 done: Fri Nov 4 20:53:44 2016
Total Scan time: 5.760 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]