Result of FASTA (omim) for
pFN21AB9562
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9562, 788 aa
1>>>pF1KB9562 788 - 788 aa - 788 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7333+/-0.000414; mu= 14.1249+/- 0.026
mean_var=118.5522+/-24.262, 0's: 0 Z-trim(115.4): 7 B-trim: 1046 in 1/51
Lambda= 0.117793
statistics sampled from 25902 (25909) to 25902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.304), width: 16
Scan time: 11.350
The best scores are: opt bits E(85289)
NP_085133 (OMIM: 605752) protein HID1 [Homo sapien ( 788) 5289 910.6 0
XP_005257283 (OMIM: 605752) PREDICTED: protein HID ( 787) 5270 907.3 0
>>NP_085133 (OMIM: 605752) protein HID1 [Homo sapiens] (788 aa)
initn: 5289 init1: 5289 opt: 5289 Z-score: 4862.6 bits: 910.6 E(85289): 0
Smith-Waterman score: 5289; 100.0% identity (100.0% similar) in 788 aa overlap (1-788:1-788)
10 20 30 40 50 60
pF1KB9 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
730 740 750 760 770 780
pF1KB9 KLFEIQRV
::::::::
NP_085 KLFEIQRV
>>XP_005257283 (OMIM: 605752) PREDICTED: protein HID1 is (787 aa)
initn: 4419 init1: 4419 opt: 5270 Z-score: 4845.2 bits: 907.3 E(85289): 0
Smith-Waterman score: 5270; 99.9% identity (99.9% similar) in 788 aa overlap (1-788:1-787)
10 20 30 40 50 60
pF1KB9 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGSTDSKLNFRKAVIQLTTKTQPVEATDDAFWDQFWADTATSVQDVFALVPAAEIRAVRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESPSNLATLCYKAVEKLVQGAESGCHSEKEKQIVLNCSRLLTRVLPYIFEDPDWRGFFWS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TVPGAGRGGQGEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TVPGAGRGG-GEEDDEHARPLAESLLLAIADLLFCPDFTVQSHRRSTVDSAEDVHSLDSC
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EYIWEAGVGFAHSPQPNYIHDMNRMELLKLLLTCFSEAMYLPPAPESGSTNPWVQFFCST
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ENRHALPLFTSLLNTVCAYDPVGYGIPYNHLLFSDYREPLVEEAAQVLIVTLDHDSASSA
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPTVDGTTTGTAMDDADPPGPENLFVNYLSRIHREEDFQFILKGIARLLSNPLLQTYLPN
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 STKKIQFHQELLVLFWKLCDFNKKFLFFVLKSSDVLDILVPILFFLNDARADQSRVGLMH
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IGVFILLLLSGERNFGVRLNKPYSIRVPMDIPVFTGTHADLLIVVFHKIITSGHQRLQPL
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDCLLTIVVNVSPYLKSLSMVTANKLLHLLEAFSTTWFLFSAAQNHHLVFFLLEVFNNII
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYQFDGNSNLVYAIIRKRSIFHQLANLPTDPPTIHKALQRRRRTPEPLSRTGSQEGTSME
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB9 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSRPAAPAEPGTLKTSLVATPGIDKLTEKSQVSEDGTLRSLEPEPQQSLEDGSPAKGEPS
600 610 620 630 640 650
670 680 690 700 710 720
pF1KB9 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMRLLQVLVPQVEKICIDKGLTDE
660 670 680 690 700 710
730 740 750 760 770 780
pF1KB9 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEILRFLQHGTLVGLLPVPHPILIRKYQANSGTAMWFRTYMWGVIYLRNVDPPVWYDTDV
720 730 740 750 760 770
pF1KB9 KLFEIQRV
::::::::
XP_005 KLFEIQRV
780
788 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:27:54 2016 done: Fri Nov 4 23:27:56 2016
Total Scan time: 11.350 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]