Result of FASTA (ccds) for
pFN21AB6826
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6826, 187 aa
1>>>pF1KB6826 187 - 187 aa - 187 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7362+/-0.000806; mu= 10.7431+/- 0.048
mean_var=65.1612+/-13.245, 0's: 0 Z-trim(106.4): 26 B-trim: 84 in 1/52
Lambda= 0.158884
statistics sampled from 8965 (8983) to 8965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.276), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 1235 291.5 2e-79
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 380 95.6 2.2e-20
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 347 88.0 3.8e-18
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 346 87.8 4.4e-18
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 338 85.9 1.6e-17
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 335 85.2 2.5e-17
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 334 85.0 3.1e-17
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 331 84.3 4.8e-17
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 330 84.1 5.6e-17
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 325 82.9 1.2e-16
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 324 82.7 1.4e-16
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 312 80.0 9.8e-16
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 310 79.5 1.3e-15
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 310 79.5 1.3e-15
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 308 79.0 1.8e-15
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 291 75.1 2.7e-14
>>CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 (187 aa)
initn: 1235 init1: 1235 opt: 1235 Z-score: 1539.5 bits: 291.5 E(32554): 2e-79
Smith-Waterman score: 1235; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)
10 20 30 40 50 60
pF1KB6 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 IPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINR
130 140 150 160 170 180
pF1KB6 LTGYLRN
:::::::
CCDS64 LTGYLRN
>>CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 (208 aa)
initn: 370 init1: 320 opt: 380 Z-score: 479.6 bits: 95.6 E(32554): 2.2e-20
Smith-Waterman score: 380; 37.2% identity (68.3% similar) in 183 aa overlap (1-182:1-183)
10 20 30 40 50
pF1KB6 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNG-RLEYCLKDRMNF
: : .. .:.: ::: .:.. .:. : ::. : . ::: .:. .. :: : ::
CCDS34 MIIKHFFGTVLVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 DIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHL
.:.. . ::.:: . ..::::.::..:: . : ::.:. .:..: ....:...:
CCDS34 LLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 KTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFIN
.... . :: . : :. :..: :. :: ::. ..:: :::.::.::: : ..:.
CCDS34 EALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVF
130 140 150 160 170 180
180
pF1KB6 RLTGYLRN
::
CCDS34 SLTEKLSKQGRPLNDMKQELTTEFRSPR
190 200
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 338 init1: 338 opt: 347 Z-score: 439.4 bits: 88.0 E(32554): 3.8e-18
Smith-Waterman score: 347; 37.2% identity (72.3% similar) in 148 aa overlap (41-186:40-186)
20 30 40 50 60
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEY--CLKDRMNFDIPEEIKQL
:: :. ::. . :::::..: .:.:. .
CCDS34 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQM-GRISHFSCLKDRYDFGFPQEVFDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
.:::: .: ...::.:. : .: .::..:.::..... ....:.: :.. . ...
CCDS34 NQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLEACVTQEVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN
:... . : : ...:. :: :: .:.:: ::: .::.::.:.: : . : ::
CCDS34 VEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTNLQKGLRRK
130 140 150 160 170 180
CCDS34 D
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 335 init1: 335 opt: 346 Z-score: 438.1 bits: 87.8 E(32554): 4.4e-18
Smith-Waterman score: 346; 33.9% identity (64.5% similar) in 183 aa overlap (6-186:8-186)
10 20 30 40 50
pF1KB6 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDR
:. ...: : : .:. . : . :: . .. :. ::. :::::
CCDS65 MALPFVLLMALVVLNCKSICSLGCD---LPQTHSLSNRRTLMIMAQM-GRISPFSCLKDR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 MNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQI
.: .:.: . .:::: .: ...::.:. : .: .::. :.::..... ...:.:.
CCDS65 HDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFY
: :.. . ... :: .. : : ...:. :: :: :.:: ::: .::.::.:.:
CCDS65 NDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFS
120 130 140 150 160 170
180
pF1KB6 FINRLTGYLRN
. : ::
CCDS65 LSANLQERLRRKE
180
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 331 init1: 331 opt: 338 Z-score: 428.2 bits: 85.9 E(32554): 1.6e-17
Smith-Waterman score: 338; 32.4% identity (65.4% similar) in 182 aa overlap (6-186:8-186)
10 20 30 40 50
pF1KB6 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEY-CLKDRM
.. ...: : :. .:. . :. . .: . :. :. . :::::
CCDS65 MALPFALMMALVVLSCKSSCSLGCN---LSQTHSLNNRRTLMLMAQMRRISPFSCLKDRH
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 NFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQIN
.:..:.: . .:::: .: ...::.:. : .: .::..:.::..:.. ....:.:
CCDS65 DFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 HLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYF
:.. . ... :. . : : .:.:. :: :: :.:: ::: .::.::.:.. :
CCDS65 DLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSF
120 130 140 150 160 170
180
pF1KB6 INRLTGYLRN
. : ::
CCDS65 STNLQKRLRRKD
180
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 326 init1: 326 opt: 335 Z-score: 424.5 bits: 85.2 E(32554): 2.5e-17
Smith-Waterman score: 335; 37.2% identity (70.3% similar) in 148 aa overlap (41-186:40-186)
20 30 40 50 60
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEY--CLKDRMNFDIPEEIKQL
:: :. ::. . ::::: .: .::: .
CCDS64 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQM-GRISHFSCLKDRHDFGFPEEEFDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
.:::: .: ...::.:. : .: ..::..:.....:.. ...:.:.: :.. . ...
CCDS64 HQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN
:. . : : ...:. :: :: :.:: ::: .::.::.:.. : . : ::
CCDS64 VEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK
130 140 150 160 170 180
CCDS64 D
>>CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 (195 aa)
initn: 351 init1: 328 opt: 334 Z-score: 423.0 bits: 85.0 E(32554): 3.1e-17
Smith-Waterman score: 334; 38.0% identity (73.7% similar) in 137 aa overlap (52-187:52-187)
30 40 50 60 70 80
pF1KB6 MSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDIPEEIKQLQQFQKEDAALTIY
::::: .: .:.:. . .:.:: . ...
CCDS64 LGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLH
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB6 EMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMS-S
::::.::..:. . ::..:: :....: .....:..::.: : . . : . : . : .
CCDS64 EMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLETCLLQVV-GEGESAGAISSPA
90 100 110 120 130 140
150 160 170 180
pF1KB6 LHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN
: :.::. : ::: :.:: ::: .::.::...... . . ::.
CCDS64 LTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTNMQERLRSKDRDLGSS
150 160 170 180 190
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 326 init1: 326 opt: 331 Z-score: 419.5 bits: 84.3 E(32554): 4.8e-17
Smith-Waterman score: 331; 36.5% identity (70.3% similar) in 148 aa overlap (41-186:40-186)
20 30 40 50 60
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDRMNFDIPEEIKQL
:: :. ::. ::::: .: .:.: .
CCDS65 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQM-GRISPFSCLKDRHDFGLPQEEFDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
.:::: .: ...::.:. : .: ..::..:.....:.. ...:.:.:.:.. . ...
CCDS65 NQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACVIQEVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN
:. . : : ...:. :: :: :.:: ::: .::.::.:.. : . : ::
CCDS65 MEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTNLQKILRRK
130 140 150 160 170 180
CCDS65 D
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 319 init1: 319 opt: 330 Z-score: 418.3 bits: 84.1 E(32554): 5.6e-17
Smith-Waterman score: 330; 35.3% identity (63.7% similar) in 190 aa overlap (6-186:7-186)
10 20 30 40 50
pF1KB6 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDRM
::...:.: ... :.. .: . : . :: :. ::. :::::
CCDS34 MARSFSLLMVVLVLSYKSIC-SLGCDL-PQTHSLRNRRALILLAQM-GRISPFSCLKDRH
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 NFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQIN
.: .::: . .:::: .: ...::.:. : .: ..::..:.....:.. ...:.:.:
CCDS34 EFRFPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 HLKT-------VLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVE
:.. : : : .::: : ...:. :: :: :.:: ::: .::.:
CCDS34 DLEACVIQEVGVEETPLMNEDFI-------LAVRKYFQRITLYLMEKKYSPCAWEVVRAE
120 130 140 150 160 170
180
pF1KB6 ILRNFYFINRLTGYLRN
:.:.: : . : ::
CCDS34 IMRSFSFSTNLKKGLRRKD
180
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 320 init1: 320 opt: 325 Z-score: 412.1 bits: 82.9 E(32554): 1.2e-16
Smith-Waterman score: 325; 36.5% identity (69.6% similar) in 148 aa overlap (41-186:40-186)
20 30 40 50 60
pF1KB6 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLE--YCLKDRMNFDIPEEIKQL
:: :. ::. ::::: .: ::.: .
CCDS64 AVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQM-GRISPFSCLKDRHDFRIPQEEFDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLE
.:::: .: ...::.:. : .: ..::..:.....:.. ...:.:.: :.. . ...
CCDS64 NQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 KEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLTGYLRN
:. . : : ...:. :: :: ..:: ::: .::.::.:.. : . : ::
CCDS64 VEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK
130 140 150 160 170 180
CCDS64 D
187 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:27:19 2016 done: Sat Nov 5 20:27:19 2016
Total Scan time: 1.690 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]