FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9292, 270 aa 1>>>pF1KB9292 270 - 270 aa - 270 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.5323+/-0.000309; mu= -7.3964+/- 0.019 mean_var=256.7997+/-52.281, 0's: 0 Z-trim(125.4): 1 B-trim: 1125 in 1/58 Lambda= 0.080034 statistics sampled from 49165 (49167) to 49165 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.576), width: 16 Scan time: 8.940 The best scores are: opt bits E(85289) NP_660300 (OMIM: 616762) centriole, cilia and spin ( 270) 1861 226.7 3.5e-59 >>NP_660300 (OMIM: 616762) centriole, cilia and spindle- (270 aa) initn: 1861 init1: 1861 opt: 1861 Z-score: 1183.4 bits: 226.7 E(85289): 3.5e-59 Smith-Waterman score: 1861; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 pF1KB9 MSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLEQAHAPWLWDDWGPAGSSED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 MSPGSGVKSEYMKRYQEPRWEEYGPCYRELLHYRLGRRLLEQAHAPWLWDDWGPAGSSED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 SASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPEEQDAEAGDAEAEDAEDAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 SASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPEEQDAEAGDAEAEDAEDAA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 LPALPVKDVEDKPEQQTRTRETDKSPTSTEPRQQPSALFARGNRKAVKSPQRSSSKIKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 LPALPVKDVEDKPEQQTRTRETDKSPTSTEPRQQPSALFARGNRKAVKSPQRSSSKIKEN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 KHPFALYGWGEKQTDTGSQKTHNVCASAPVHEIHESALRAKNRRQVEKRKLVAQRQRAHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_660 KHPFALYGWGEKQTDTGSQKTHNVCASAPVHEIHESALRAKNRRQVEKRKLVAQRQRAHS 190 200 210 220 230 240 250 260 270 pF1KB9 VDVEKNRKMKASSSENPWMTEYMRCYSARA :::::::::::::::::::::::::::::: NP_660 VDVEKNRKMKASSSENPWMTEYMRCYSARA 250 260 270 270 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:12:44 2016 done: Sun Nov 6 22:12:45 2016 Total Scan time: 8.940 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]