(Circular) (Six-base) MAPSORT of: pFN21AB5473.seq Check: 4587 from: 1 to: 5488 pFN21AB5473 5488 bp With 182 enzymes: SgfI * April 15, 2010 09:31 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3298 278 Size: 53 83 186 936 1762 2468 Fragments arranged by size: 2468 1762 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2831 1937 Size: 894 4594 Acc65I G'GTAC_C Cuts at: 2060 2809 2060 Size: 749 4739 AclI AA'CG_TT Cuts at: 1563 3615 3988 1563 Size: 2052 373 3063 Fragments arranged by size: 3063 2052 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2214 2743 3551 4935 5203 1632 Size: 582 529 808 1384 268 1917 Fragments arranged by size: 1917 1384 808 582 529 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5291 AflIII A'CryG_T Cuts at: 1203 2352 4387 5364 1203 Size: 1149 2035 977 1327 Fragments arranged by size: 2035 1327 1149 977 AgeI A'CCGG_T Cuts at: 4319 4319 Size: 5488 AhdI GACnn_n'nnGTC Cuts at: 4217 4217 Size: 5488 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5488 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5488 AlwNI CAG_nnn'CTG Cuts at: 2240 2488 3231 4803 2240 Size: 248 743 1572 2925 Fragments arranged by size: 2925 1572 743 248 ApaLI G'TGCA_C Cuts at: 2678 3545 4701 2678 Size: 867 1156 3465 Fragments arranged by size: 3465 1156 867 ApoI r'AATT_y Cuts at: 1493 2797 3023 3175 5284 1493 Size: 1304 226 152 2109 1697 Fragments arranged by size: 2109 1697 1304 226 152 AseI AT'TA_AT Cuts at: 160 1032 4042 160 Size: 872 3010 1606 Fragments arranged by size: 3010 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5488 AvaI C'yCGr_G Cuts at: 1870 1943 2646 2813 1870 Size: 73 703 167 4545 Fragments arranged by size: 4545 703 167 73 BamHI G'GATC_C Cuts at: 2818 3185 2818 Size: 367 5121 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2060 2809 4264 618 Size: 325 217 627 273 749 1455 1842 Fragments arranged by size: 1842 1455 749 627 325 273 217 BanII G_rGCy'C Cuts at: 1391 2807 1391 Size: 1416 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2738 928 Size: 971 839 3678 Fragments arranged by size: 3678 971 839 BbvCI CC'TCA_GC Cuts at: 2664 2664 Size: 5488 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3679 3713 1903 Size: 34 1742 34 3678 Fragments arranged by size: 3678 1742 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3380 4590 3380 Size: 1210 4278 BclI T'GATC_A Cuts at: 1548 1548 Size: 5488 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4099 136 Size: 107 122 71 631 605 2427 1525 Fragments arranged by size: 2427 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5483 5483 Size: 5488 BlpI GC'TnA_GC Cuts at: 2905 2905 Size: 5488 Bme1580I G_kGCm'C Cuts at: 1790 2682 3549 4705 1790 Size: 892 867 1156 2573 Fragments arranged by size: 2573 1156 892 867 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5488 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3219 4177 442 Size: 416 53 83 399 24 1802 958 1753 Fragments arranged by size: 1802 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5488 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4148 1239 Size: 2909 2579 Bpu10I CC'TnA_GC Cuts at: 2664 2664 Size: 5488 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2543 3613 4478 4776 2543 Size: 1070 865 298 3255 Fragments arranged by size: 3255 1070 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2692 4151 882 Size: 617 1193 1459 2219 Fragments arranged by size: 2219 1459 1193 617 BsaAI yAC'GTr Cuts at: 493 1204 2683 3279 493 Size: 711 1479 596 2702 Fragments arranged by size: 2702 1479 711 596 BsaBI GATnn'nnATC Cuts at: 5482 5482 Size: 5488 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2202 3295 3677 4312 Size: 53 83 186 936 669 1093 382 635 Cuts at: 4312 275 Size: 1451 Fragments arranged by size: 1451 1093 936 669 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3921 4319 4593 4740 5151 3921 Size: 398 274 147 411 4258 Fragments arranged by size: 4258 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5263 Fragments arranged by size: 5263 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2168 1186 Size: 982 4506 BseYI C'CCAG_C Cuts at: 2375 4691 5187 2375 Size: 2316 496 2676 Fragments arranged by size: 2676 2316 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2313 1163 Size: 573 577 4338 Fragments arranged by size: 4338 577 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2938 3699 4727 1540 Size: 275 186 937 761 1028 2301 Fragments arranged by size: 2301 1028 937 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2612 2682 3549 3634 4705 2612 Size: 70 867 85 1071 3395 Fragments arranged by size: 3395 1071 867 85 70 BsmI GAATG_Cn' Cuts at: 2366 2500 2999 3092 2366 Size: 134 499 93 4762 Fragments arranged by size: 4762 499 134 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2612 2682 2807 3549 3634 4705 1391 Size: 399 822 70 125 742 85 1071 2174 Fragments arranged by size: 2174 1071 822 742 399 125 85 70 BspEI T'CCGG_A Cuts at: 5151 5151 Size: 5488 BspHI T'CATG_A Cuts at: 3377 5107 3377 Size: 1730 3758 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2781 2843 844 Size: 1937 62 3489 Fragments arranged by size: 3489 1937 62 BsrBI CCG'CTC Cuts at: 1394 1823 3375 1394 Size: 429 1552 3507 Fragments arranged by size: 3507 1552 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3983 4157 65 Size: 1183 2735 174 1396 Fragments arranged by size: 2735 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4132 4319 1700 Size: 110 2322 187 2869 Fragments arranged by size: 2869 2322 187 110 BsrGI T'GTAC_A Cuts at: 96 2451 96 Size: 2355 3133 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5488 BssSI C'ACGA_G Cuts at: 3548 4560 3548 Size: 1012 4476 BstAPI GCAn_nnn'nTGC Cuts at: 794 2607 794 Size: 1813 3675 BstBI TT'CG_AA Cuts at: 4292 4292 Size: 5488 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5488 BstXI CCAn_nnnn'nTGG Cuts at: 2213 2213 Size: 5488 BstYI r'GATC_y Cuts at: 1972 2818 3185 3570 3587 5039 5125 5137 5483 Size: 846 367 385 17 1452 86 12 346 Cuts at: 5483 1972 Size: 1977 Fragments arranged by size: 1977 1452 846 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2464 2464 Size: 5488 BtgI C'CryG_G Cuts at: 513 1065 2004 2280 513 Size: 552 939 276 3721 Fragments arranged by size: 3721 939 552 276 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4749 Fragments arranged by size: 4749 683 56 BtsI GCAGTG_nn' Cuts at: 2325 3004 3798 3818 2325 Size: 679 794 20 3995 Fragments arranged by size: 3995 794 679 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5488 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5453 DraI TTT'AAA Cuts at: 2792 2792 Size: 5488 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4495 809 Size: 507 3179 1802 Fragments arranged by size: 3179 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2935 3824 5453 Size: 54 1425 50 275 18 1105 889 1629 Cuts at: 5453 8 Size: 43 Fragments arranged by size: 1629 1425 1105 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2935 1537 Size: 275 1123 4090 Fragments arranged by size: 4090 1123 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2145 2190 3418 1353 Size: 792 45 1228 3423 Fragments arranged by size: 3423 1228 792 45 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4075 4449 4595 387 Size: 1064 138 2486 374 146 1280 Fragments arranged by size: 2486 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2214 2743 3551 4148 4935 5203 1239 Size: 393 582 529 808 597 787 268 1524 Fragments arranged by size: 1524 808 787 597 582 529 393 268 EcoRI G'AATT_C Cuts at: 2797 3175 2797 Size: 378 5110 EcoRV GAT'ATC Cuts at: 2053 2053 Size: 5488 FspI TGC'GCA Cuts at: 3994 3994 Size: 5488 HaeII r_GCGC'y Cuts at: 1678 4635 1678 Size: 2957 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4129 4161 4203 4235 1373 Size: 32 135 32 2557 32 42 32 2626 Fragments arranged by size: 2626 2557 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2832 3078 669 Size: 988 281 894 246 3079 Fragments arranged by size: 3079 988 894 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5488 HpaI GTT'AAC Cuts at: 3078 3078 Size: 5488 KpnI G_GTAC'C Cuts at: 2064 2813 2064 Size: 749 4739 MfeI C'AATT_G Cuts at: 3087 3087 Size: 5488 MluI A'CGCG_T Cuts at: 5364 5364 Size: 5488 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4602 4786 1305 Size: 3297 184 2007 Fragments arranged by size: 3297 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3666 Fragments arranged by size: 3666 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 2211 3446 3805 3964 518 Size: 648 843 202 1235 359 159 2042 Fragments arranged by size: 2042 1235 843 648 359 202 159 MspA1I CmG'CkG Cuts at: 1606 2341 2375 2904 3581 4729 4974 1606 Size: 735 34 529 677 1148 245 2120 Fragments arranged by size: 2120 1148 735 677 529 245 34 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3997 Fragments arranged by size: 3997 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5488 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5488 NotI GC'GGCC_GC Cuts at: 2935 2935 Size: 5488 NspI r_CATG'y Cuts at: 1132 1229 2356 2846 4391 1132 Size: 97 1127 490 1545 2229 Fragments arranged by size: 2229 1545 1127 490 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5488 PciI A'CATG_T Cuts at: 2352 4387 2352 Size: 2035 3453 PflMI CCAn_nnn'nTGG Cuts at: 1108 2281 1108 Size: 1173 4315 PmeI GTTT'AAAC Cuts at: 2792 2792 Size: 5488 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3557 3589 5070 5102 3557 Size: 32 1481 32 3943 Fragments arranged by size: 3943 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5488 PsiI TTA'TAA Cuts at: 3058 3058 Size: 5488 PstI C_TGCA'G Cuts at: 830 2136 2236 2346 2840 830 Size: 1306 100 110 494 3478 Fragments arranged by size: 3478 1306 494 110 100 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5488 PvuII CAG'CTG Cuts at: 2341 2375 2341 Size: 34 5454 SalI G'TCGA_C Cuts at: 1936 2830 1936 Size: 894 4594 SbfI CC_TGCA'GG Cuts at: 2840 2840 Size: 5488 ScaI AGT'ACT Cuts at: 3736 5448 3736 Size: 1712 3776 SfcI C'TryA_G Cuts at: 826 1045 2132 2232 2342 2740 2836 3971 4652 Size: 219 1087 100 110 398 96 1135 681 Cuts at: 4652 4843 826 Size: 191 1471 Fragments arranged by size: 1471 1135 1087 681 398 219 191 110 100 96 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5488 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5488 SmaI CCC'GGG Cuts at: 1872 2815 1872 Size: 943 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2522 2646 3592 4493 4755 820 Size: 197 926 579 124 946 901 262 1553 Fragments arranged by size: 1553 946 926 901 579 262 197 124 SnaBI TAC'GTA Cuts at: 493 3279 493 Size: 2786 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5488 SphI G_CATG'C Cuts at: 1132 2846 1132 Size: 1714 3774 SspI AAT'ATT Cuts at: 5 52 3412 5 Size: 47 3360 2081 Fragments arranged by size: 3360 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5488 StyI C'CwwG_G Cuts at: 513 1065 2004 2927 513 Size: 552 939 923 3074 Fragments arranged by size: 3074 939 923 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2008 2595 3515 3532 3685 3870 4315 Size: 1255 428 587 920 17 153 185 445 Cuts at: 4315 325 Size: 1498 Fragments arranged by size: 1498 1255 920 587 445 428 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2451 3734 5446 Size: 274 80 33 51 1443 474 1283 1712 Cuts at: 5446 96 Size: 138 Fragments arranged by size: 1712 1443 1283 474 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2433 2465 5448 5480 2433 Size: 32 2983 32 2441 Fragments arranged by size: 2983 2441 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5488 XbaI T'CTAG_A Cuts at: 2824 2824 Size: 5488 XhoI C'TCGA_G Cuts at: 1943 2646 1943 Size: 703 4785 XmaI C'CCGG_G Cuts at: 1870 2813 1870 Size: 943 4545 XmnI GAAnn'nnTTC Cuts at: 3617 3617 Size: 5488 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3296 276 Size: 53 83 186 936 1762 2468 Fragments arranged by size: 2468 1762 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI EcoRV FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstZ17I DraIII EcoICRI EcoNI EcoO109I FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI