FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1008, 204 aa 1>>>pF1KE1008 204 - 204 aa - 204 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.0078+/-0.000895; mu= -6.9139+/- 0.054 mean_var=434.4559+/-87.963, 0's: 0 Z-trim(119.0): 3 B-trim: 215 in 1/54 Lambda= 0.061532 statistics sampled from 20165 (20168) to 20165 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.862), E-opt: 0.2 (0.62), width: 16 Scan time: 2.750 The best scores are: opt bits E(32554) CCDS32745.1 MXRA7 gene_id:439921|Hs108|chr17 ( 204) 1373 134.2 5.5e-32 CCDS32746.1 MXRA7 gene_id:439921|Hs108|chr17 ( 177) 1141 113.5 8e-26 CCDS45786.1 MXRA7 gene_id:439921|Hs108|chr17 ( 170) 1138 113.2 9.3e-26 >>CCDS32745.1 MXRA7 gene_id:439921|Hs108|chr17 (204 aa) initn: 1373 init1: 1373 opt: 1373 Z-score: 687.7 bits: 134.2 E(32554): 5.5e-32 Smith-Waterman score: 1373; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE1 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM 130 140 150 160 170 180 190 200 pF1KE1 KDNKETFGEMSDGDVQEQLRLYDM :::::::::::::::::::::::: CCDS32 KDNKETFGEMSDGDVQEQLRLYDM 190 200 >>CCDS32746.1 MXRA7 gene_id:439921|Hs108|chr17 (177 aa) initn: 1343 init1: 1141 opt: 1141 Z-score: 577.1 bits: 113.5 E(32554): 8e-26 Smith-Waterman score: 1141; 98.8% identity (100.0% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 pF1KE1 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM :::::::::::::::::::::::::::::::::::::::::::::::.. CCDS32 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRIELTSDLTSL 130 140 150 160 170 190 200 pF1KE1 KDNKETFGEMSDGDVQEQLRLYDM >>CCDS45786.1 MXRA7 gene_id:439921|Hs108|chr17 (170 aa) initn: 1340 init1: 1138 opt: 1138 Z-score: 575.9 bits: 113.2 E(32554): 9.3e-26 Smith-Waterman score: 1138; 98.2% identity (100.0% similar) in 170 aa overlap (1-170:1-170) 10 20 30 40 50 60 pF1KE1 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MEAPAELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 APEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRVQKEQLAAIFKLM :::::::::::::::::::::::::::::::::::::::::::::::... CCDS45 DGEKGPSSEGPEEEDGEGFSFKYSPGKLRGNQYKKMMTKEELEEEQRTEE 130 140 150 160 170 190 200 pF1KE1 KDNKETFGEMSDGDVQEQLRLYDM 204 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:13:14 2016 done: Sun Nov 6 22:13:15 2016 Total Scan time: 2.750 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]