FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1323, 95 aa 1>>>pF1KE1323 95 - 95 aa - 95 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5205+/-0.000627; mu= 12.3952+/- 0.038 mean_var=49.5666+/- 9.957, 0's: 0 Z-trim(110.0): 43 B-trim: 50 in 1/47 Lambda= 0.182171 statistics sampled from 11228 (11271) to 11228 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.346), width: 16 Scan time: 1.440 The best scores are: opt bits E(32554) CCDS46536.1 CCL20 gene_id:6364|Hs108|chr2 ( 95) 644 176.1 2.9e-45 CCDS2469.1 CCL20 gene_id:6364|Hs108|chr2 ( 96) 632 172.9 2.6e-44 >>CCDS46536.1 CCL20 gene_id:6364|Hs108|chr2 (95 aa) initn: 644 init1: 644 opt: 644 Z-score: 926.2 bits: 176.1 E(32554): 2.9e-45 Smith-Waterman score: 644; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95) 10 20 30 40 50 60 pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MCCTKSLLLAALMSVLLLHLCGESEASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDIN 10 20 30 40 50 60 70 80 90 pF1KE1 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM ::::::::::::::::::::::::::::::::::: CCDS46 AIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM 70 80 90 >>CCDS2469.1 CCL20 gene_id:6364|Hs108|chr2 (96 aa) initn: 484 init1: 484 opt: 632 Z-score: 909.0 bits: 172.9 E(32554): 2.6e-44 Smith-Waterman score: 632; 99.0% identity (99.0% similar) in 96 aa overlap (1-95:1-96) 10 20 30 40 50 pF1KE1 MCCTKSLLLAALMSVLLLHLCGESEA-SNFDCCLGYTDRILHPKFIVGFTRQLANEGCDI :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: CCDS24 MCCTKSLLLAALMSVLLLHLCGESEAASNFDCCLGYTDRILHPKFIVGFTRQLANEGCDI 10 20 30 40 50 60 60 70 80 90 pF1KE1 NAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM :::::::::::::::::::::::::::::::::::: CCDS24 NAIIFHTKKKLSVCANPKQTWVKYIVRLLSKKVKNM 70 80 90 95 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:13:47 2016 done: Sun Nov 6 22:13:48 2016 Total Scan time: 1.440 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]