FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8401, 953 aa 1>>>pF1KB8401 953 - 953 aa - 953 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8013+/-0.00131; mu= 18.7332+/- 0.078 mean_var=72.2821+/-13.830, 0's: 0 Z-trim(100.4): 40 B-trim: 0 in 0/50 Lambda= 0.150855 statistics sampled from 6094 (6114) to 6094 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.531), E-opt: 0.2 (0.188), width: 16 Scan time: 4.130 The best scores are: opt bits E(32554) CCDS7815.1 COPB1 gene_id:1315|Hs108|chr11 ( 953) 6121 1342.5 0 CCDS32622.1 AP2B1 gene_id:163|Hs108|chr17 ( 937) 266 68.2 8.6e-11 CCDS32621.1 AP2B1 gene_id:163|Hs108|chr17 ( 951) 266 68.2 8.8e-11 >>CCDS7815.1 COPB1 gene_id:1315|Hs108|chr11 (953 aa) initn: 6121 init1: 6121 opt: 6121 Z-score: 7193.8 bits: 1342.5 E(32554): 0 Smith-Waterman score: 6121; 100.0% identity (100.0% similar) in 953 aa overlap (1-953:1-953) 10 20 30 40 50 60 pF1KB8 MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGST 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 VLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 VLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 KKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 KKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 LEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 LEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEIR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 RSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 RSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRP 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 PLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 PLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEK 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 RNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 RNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB8 GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB8 DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEF 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB8 RQMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 RQMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI 850 860 870 880 890 900 910 920 930 940 950 pF1KB8 FGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSI ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 FGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSI 910 920 930 940 950 >>CCDS32622.1 AP2B1 gene_id:163|Hs108|chr17 (937 aa) initn: 183 init1: 105 opt: 266 Z-score: 307.2 bits: 68.2 E(32554): 8.6e-11 Smith-Waterman score: 296; 19.8% identity (52.1% similar) in 606 aa overlap (26-604:18-577) 10 20 30 40 50 60 pF1KB8 MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM :: .:.. ... ::.:::: . :. . .:. CCDS32 MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFP 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGST .. . .. .:::. .. :. :: :.. ... :: . :: .::. . CCDS32 DVVN-CMQTDNLELKKLVYLYLMNYAKSQPD-----MAIMAVNSFVKDCEDPNPLIRALA 60 70 80 90 100 130 140 150 160 170 pF1KB8 LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPEL--IH .: . .. .. : : .: ::. . :::..:.. . .. ... : : .. CCDS32 VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB8 DFLVNEKDASCKRNAFMMLIHADQDRA----LDYLSTCIDQVQT-FGDILQLVIVELIYK : :. ... :: : . .... :: :... : ... . . .. CCDS32 D-LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDC 170 180 190 200 210 220 240 250 260 270 280 pF1KB8 VCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIK-----AAAQCYIDL . . ::.. : .. . .: ... :.. :.::.. . .: . : .. CCDS32 LSNYNPKDD----REAQSICERVTPRLSH--ANSAVVLSAVKVLMKFLELLPKDSDYYNM 230 240 250 260 270 290 300 310 320 330 pF1KB8 IIKE----------SDNNVKLIVLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRK ..:. .. .:. ..: : :.: . : . :.. .. : . . :. CCDS32 LLKKLAPPLVTLLSGEPEVQYVAL-RNINLIVQKRPEILKQEI--KVFFVKYNDPIYVKL 280 290 300 310 320 330 340 350 360 370 380 390 pF1KB8 KTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMA . :.. . :.:. :. ... ::. . .. :.: :. ::.. :... . : CCDS32 EKLDIMIRLASQANIAQVLAELKEYATEV-------DVDFVRKA-VRAIGRCAIKVEQSA 340 350 360 370 380 400 410 420 430 440 450 pF1KB8 ANVIPVLMEFLSDNNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGA . .:..... . . .. ... .:. .... : :. . : . .. . CCDS32 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAM 390 400 410 420 430 440 460 470 480 490 500 510 pF1KB8 LWILGEYCSTKEDIQSVMTEIRRSL-GEIPIVESEIKKEAGEL---KPEEEITVGPVQKL .::.::: .. . .. . ... : :. . .: :: : .:.: CCDS32 IWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE------TQEL 450 460 470 480 490 500 520 530 540 550 560 570 pF1KB8 VTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQE : .. . :::. :. : . :: . ::. : .: ...: :..: CCDS32 VQQVLSLATQD---SDNPDLR--DRGYIYWRLLSTD-------PVTAKEVVLSEKPLISE 510 520 530 540 550 580 590 600 610 620 630 pF1KB8 KKKQNSFVAEAMLLMATILHLGK-SSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNK . . : :: : :.:. .:. .:: CCDS32 ETD----LIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIHRKHLPIHHGSTDAGDSP 560 570 580 590 600 640 650 660 670 680 690 pF1KB8 ECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSL CCDS32 VGTTTATNLEQPQVIPSQGDLLGDLLNLDLGPPVNVPQVSSMQMGAVDLLGGGLDSLVGQ 610 620 630 640 650 660 >>CCDS32621.1 AP2B1 gene_id:163|Hs108|chr17 (951 aa) initn: 183 init1: 105 opt: 266 Z-score: 307.1 bits: 68.2 E(32554): 8.8e-11 Smith-Waterman score: 296; 19.8% identity (52.1% similar) in 606 aa overlap (26-604:18-577) 10 20 30 40 50 60 pF1KB8 MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM :: .:.. ... ::.:::: . :. . .:. CCDS32 MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFP 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGST .. . .. .:::. .. :. :: :.. ... :: . :: .::. . CCDS32 DVVN-CMQTDNLELKKLVYLYLMNYAKSQPD-----MAIMAVNSFVKDCEDPNPLIRALA 60 70 80 90 100 130 140 150 160 170 pF1KB8 LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPEL--IH .: . .. .. : : .: ::. . :::..:.. . .. ... : : .. CCDS32 VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 110 120 130 140 150 160 180 190 200 210 220 230 pF1KB8 DFLVNEKDASCKRNAFMMLIHADQDRA----LDYLSTCIDQVQT-FGDILQLVIVELIYK : :. ... :: : . .... :: :... : ... . . .. CCDS32 D-LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDC 170 180 190 200 210 220 240 250 260 270 280 pF1KB8 VCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIK-----AAAQCYIDL . . ::.. : .. . .: ... :.. :.::.. . .: . : .. CCDS32 LSNYNPKDD----REAQSICERVTPRLSH--ANSAVVLSAVKVLMKFLELLPKDSDYYNM 230 240 250 260 270 290 300 310 320 330 pF1KB8 IIKE----------SDNNVKLIVLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRK ..:. .. .:. ..: : :.: . : . :.. .. : . . :. CCDS32 LLKKLAPPLVTLLSGEPEVQYVAL-RNINLIVQKRPEILKQEI--KVFFVKYNDPIYVKL 280 290 300 310 320 330 340 350 360 370 380 390 pF1KB8 KTLQLALDLVSSRNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMA . :.. . :.:. :. ... ::. . .. :.: :. ::.. :... . : CCDS32 EKLDIMIRLASQANIAQVLAELKEYATEV-------DVDFVRKA-VRAIGRCAIKVEQSA 340 350 360 370 380 400 410 420 430 440 450 pF1KB8 ANVIPVLMEFLSDNNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGA . .:..... . . .. ... .:. .... : :. . : . .. . CCDS32 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAM 390 400 410 420 430 440 460 470 480 490 500 510 pF1KB8 LWILGEYCSTKEDIQSVMTEIRRSL-GEIPIVESEIKKEAGEL---KPEEEITVGPVQKL .::.::: .. . .. . ... : :. . .: :: : .:.: CCDS32 IWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE------TQEL 450 460 470 480 490 500 520 530 540 550 560 570 pF1KB8 VTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYVALVQE : .. . :::. :. : . :: . ::. : .: ...: :..: CCDS32 VQQVLSLATQD---SDNPDLR--DRGYIYWRLLSTD-------PVTAKEVVLSEKPLISE 510 520 530 540 550 580 590 600 610 620 630 pF1KB8 KKKQNSFVAEAMLLMATILHLGK-SSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNK . . : :: : :.:. .:. .:: CCDS32 ETD----LIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIHRKHLPIHHGSTDAGDSP 560 570 580 590 600 640 650 660 670 680 690 pF1KB8 ECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSL CCDS32 VGTTTATNLEQPQVIPSQGDLLGDLLNLDLGPPVNVPQVSSMQMGAVDLLGGGLDSLLGS 610 620 630 640 650 660 953 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:17:13 2016 done: Sun Nov 6 22:17:14 2016 Total Scan time: 4.130 Total Display time: 0.080 Function used was FASTA [36.3.4 Apr, 2011]