(Circular) (Six-base) MAPSORT of: pFN21AB9657.seq Check: 6810 from: 1 to: 5311 pFN21AB9657 5311 bp With 182 enzymes: SgfI * January 31, 2011 17:47 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3121 278 Size: 53 83 186 936 1585 2468 Fragments arranged by size: 2468 1585 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2654 1937 Size: 717 4594 Acc65I G'GTAC_C Cuts at: 2632 2632 Size: 5311 AclI AA'CG_TT Cuts at: 1563 3438 3811 1563 Size: 1875 373 3063 Fragments arranged by size: 3063 1875 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3374 4758 5026 1632 Size: 1742 1384 268 1917 Fragments arranged by size: 1917 1742 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5114 AflIII A'CryG_T Cuts at: 1203 2016 4210 5187 1203 Size: 813 2194 977 1327 Fragments arranged by size: 2194 1327 977 813 AgeI A'CCGG_T Cuts at: 4142 4142 Size: 5311 AhdI GACnn_n'nnGTC Cuts at: 4040 4040 Size: 5311 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5311 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5311 AlwNI CAG_nnn'CTG Cuts at: 2374 3054 4626 2374 Size: 680 1572 3059 Fragments arranged by size: 3059 1572 680 ApaI G_GGCC'C Cuts at: 2160 2160 Size: 5311 ApaLI G'TGCA_C Cuts at: 3368 4524 3368 Size: 1156 4155 ApoI r'AATT_y Cuts at: 1493 2620 2846 2998 5107 1493 Size: 1127 226 152 2109 1697 Fragments arranged by size: 2109 1697 1127 226 152 AseI AT'TA_AT Cuts at: 160 1032 3865 160 Size: 872 2833 1606 Fragments arranged by size: 2833 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5311 AvaI C'yCGr_G Cuts at: 1870 1943 2636 1870 Size: 73 693 4545 Fragments arranged by size: 4545 693 73 BamHI G'GATC_C Cuts at: 2641 3008 2641 Size: 367 4944 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2632 4087 618 Size: 325 217 627 845 1455 1842 Fragments arranged by size: 1842 1455 845 627 325 217 BanII G_rGCy'C Cuts at: 1391 2160 2630 1391 Size: 769 470 4072 Fragments arranged by size: 4072 769 470 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4340 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3502 3536 1903 Size: 34 1565 34 3678 Fragments arranged by size: 3678 1565 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3203 4413 3203 Size: 1210 4101 BclI T'GATC_A Cuts at: 1548 1548 Size: 5311 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2080 3922 136 Size: 107 122 71 631 605 408 1842 1525 Fragments arranged by size: 1842 1525 631 605 408 122 107 71 BglII A'GATC_T Cuts at: 5306 5306 Size: 5311 BlpI GC'TnA_GC Cuts at: 2432 2552 2728 2432 Size: 120 176 5015 Fragments arranged by size: 5015 176 120 Bme1580I G_kGCm'C Cuts at: 1790 2160 3372 4528 1790 Size: 370 1212 1156 2573 Fragments arranged by size: 2573 1212 1156 370 BmgBI CAC'GTC Cuts at: 1318 2017 1318 Size: 699 4612 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2362 3042 4000 Size: 416 53 83 399 24 945 680 958 Cuts at: 4000 442 Size: 1753 Fragments arranged by size: 1753 958 945 680 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5311 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2527 2527 Size: 5311 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2477 2593 3971 1239 Size: 1238 116 1378 2579 Fragments arranged by size: 2579 1378 1238 116 Bpu10I CC'TnA_GC Cuts at: 2054 2054 Size: 5311 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2435 3436 4301 4599 2435 Size: 1001 865 298 3147 Fragments arranged by size: 3147 1001 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3974 882 Size: 617 2475 2219 Fragments arranged by size: 2475 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3102 493 Size: 711 1898 2702 Fragments arranged by size: 2702 1898 711 BsaBI GATnn'nnATC Cuts at: 5305 5305 Size: 5311 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2181 3118 3500 4135 Size: 53 83 186 936 648 937 382 635 Cuts at: 4135 275 Size: 1451 Fragments arranged by size: 1451 937 936 648 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3744 4142 4416 4563 4974 3744 Size: 398 274 147 411 4081 Fragments arranged by size: 4081 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5086 Fragments arranged by size: 5086 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2330 1186 Size: 1144 4167 BseYI C'CCAG_C Cuts at: 4514 5010 4514 Size: 496 4815 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4738 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2043 2761 3522 4550 1540 Size: 275 186 42 718 761 1028 2301 Fragments arranged by size: 2301 1028 761 718 275 186 42 BsiHKAI G_wGCw'C Cuts at: 3372 3457 4528 3372 Size: 85 1071 4155 Fragments arranged by size: 4155 1071 85 BsmI GAATG_Cn' Cuts at: 2822 2915 2822 Size: 93 5218 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2160 2630 3372 3457 4528 1391 Size: 399 370 470 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 470 399 370 85 BspEI T'CCGG_A Cuts at: 4974 4974 Size: 5311 BspHI T'CATG_A Cuts at: 3200 4930 3200 Size: 1730 3581 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2666 844 Size: 1822 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2097 2548 3198 1394 Size: 429 274 451 650 3507 Fragments arranged by size: 3507 650 451 429 274 BsrDI GCAATG_nn' Cuts at: 65 1248 3806 3980 65 Size: 1183 2558 174 1396 Fragments arranged by size: 2558 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2038 2079 3955 4142 1700 Size: 110 228 41 1876 187 2869 Fragments arranged by size: 2869 1876 228 187 110 41 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5311 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5311 BssSI C'ACGA_G Cuts at: 2543 3371 4383 2543 Size: 828 1012 3471 Fragments arranged by size: 3471 1012 828 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5311 BstBI TT'CG_AA Cuts at: 4115 4115 Size: 5311 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5311 BstYI r'GATC_y Cuts at: 1972 2641 3008 3393 3410 4862 4948 4960 5306 Size: 669 367 385 17 1452 86 12 346 Cuts at: 5306 1972 Size: 1977 Fragments arranged by size: 1977 1452 669 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2169 513 Size: 552 1104 3655 Fragments arranged by size: 3655 1104 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4572 Fragments arranged by size: 4572 683 56 BtsI GCAGTG_nn' Cuts at: 2827 3621 3641 2827 Size: 794 20 4497 Fragments arranged by size: 4497 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5311 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5276 DraI TTT'AAA Cuts at: 2615 2615 Size: 5311 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4318 809 Size: 507 3002 1802 Fragments arranged by size: 3002 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2040 2340 2460 Size: 54 1425 50 275 18 210 300 120 Cuts at: 2460 2758 3647 5276 8 Size: 298 889 1629 43 Fragments arranged by size: 1629 1425 889 300 298 275 210 120 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2040 2758 1537 Size: 275 228 718 4090 Fragments arranged by size: 4090 718 275 228 EarI CTCTTCn'nnn_ Cuts at: 1353 2064 3241 1353 Size: 711 1177 3423 Fragments arranged by size: 3423 1177 711 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2178 3898 4272 4418 387 Size: 1064 138 589 1720 374 146 1280 Fragments arranged by size: 1720 1280 1064 589 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2477 2593 3374 3971 4758 5026 1239 Size: 393 845 116 781 597 787 268 1524 Fragments arranged by size: 1524 845 787 781 597 393 268 116 EcoNI CCTnn'n_nnAGG Cuts at: 2483 2483 Size: 5311 EcoO109I rG'GnC_Cy Cuts at: 2156 2488 2586 2156 Size: 332 98 4881 Fragments arranged by size: 4881 332 98 EcoRI G'AATT_C Cuts at: 2620 2998 2620 Size: 378 4933 FspI TGC'GCA Cuts at: 3817 3817 Size: 5311 HaeII r_GCGC'y Cuts at: 1678 2359 4458 1678 Size: 681 2099 2531 Fragments arranged by size: 2531 2099 681 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3952 3984 4026 4058 1373 Size: 32 135 32 2380 32 42 32 2626 Fragments arranged by size: 2626 2380 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2655 2901 669 Size: 988 281 717 246 3079 Fragments arranged by size: 3079 988 717 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5311 HpaI GTT'AAC Cuts at: 2901 2901 Size: 5311 KpnI G_GTAC'C Cuts at: 2636 2636 Size: 5311 MfeI C'AATT_G Cuts at: 2910 2910 Size: 5311 MluI A'CGCG_T Cuts at: 5187 5187 Size: 5311 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2164 4425 4609 1305 Size: 859 2261 184 2007 Fragments arranged by size: 2261 2007 859 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2342 10 Size: 54 1425 343 510 2979 Fragments arranged by size: 2979 1425 510 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3269 3628 3787 518 Size: 648 2103 359 159 2042 Fragments arranged by size: 2103 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2171 2289 2332 2727 3404 4552 4797 1606 Size: 565 118 43 395 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 565 395 245 118 43 NaeI GCC'GGC Cuts at: 2040 2040 Size: 5311 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4759 NdeI CA'TA_TG Cuts at: 387 387 Size: 5311 NgoMIV G'CCGG_C Cuts at: 2038 2038 Size: 5311 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5311 NotI GC'GGCC_GC Cuts at: 2758 2758 Size: 5311 NspI r_CATG'y Cuts at: 1132 1229 2669 4214 1132 Size: 97 1440 1545 2229 Fragments arranged by size: 2229 1545 1440 97 PasI CC'CwG_GG Cuts at: 1348 2215 1348 Size: 867 4444 PciI A'CATG_T Cuts at: 4210 4210 Size: 5311 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5311 PmeI GTTT'AAAC Cuts at: 2615 2615 Size: 5311 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3380 3412 4893 4925 3380 Size: 32 1481 32 3766 Fragments arranged by size: 3766 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2488 2488 Size: 5311 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5311 PsiI TTA'TAA Cuts at: 2881 2881 Size: 5311 PspOMI G'GGCC_C Cuts at: 2156 2156 Size: 5311 PstI C_TGCA'G Cuts at: 830 2325 2531 2663 830 Size: 1495 206 132 3478 Fragments arranged by size: 3478 1495 206 132 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5311 SacII CC_GC'GG Cuts at: 2172 2172 Size: 5311 SalI G'TCGA_C Cuts at: 1936 2653 1936 Size: 717 4594 SapI GCTCTTCn'nnn_ Cuts at: 2064 2064 Size: 5311 SbfI CC_TGCA'GG Cuts at: 2663 2663 Size: 5311 ScaI AGT'ACT Cuts at: 3559 5271 3559 Size: 1712 3599 SexAI A'CCwGG_T Cuts at: 2484 2484 Size: 5311 SfcI C'TryA_G Cuts at: 826 1045 2321 2527 2659 3794 4475 4666 826 Size: 219 1276 206 132 1135 681 191 1471 Fragments arranged by size: 1471 1276 1135 681 219 206 191 132 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5311 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5311 SmaI CCC'GGG Cuts at: 1872 2638 1872 Size: 766 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2450 3415 4316 4578 820 Size: 197 926 507 965 901 262 1553 Fragments arranged by size: 1553 965 926 901 507 262 197 SnaBI TAC'GTA Cuts at: 493 3102 493 Size: 2609 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5311 SphI G_CATG'C Cuts at: 1132 2669 1132 Size: 1537 3774 SspI AAT'ATT Cuts at: 5 52 3235 5 Size: 47 3183 2081 Fragments arranged by size: 3183 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5311 StyI C'CwwG_G Cuts at: 513 1065 2750 513 Size: 552 1685 3074 Fragments arranged by size: 3074 1685 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2381 2557 3338 3355 3508 3693 4138 Size: 1255 801 176 781 17 153 185 445 Cuts at: 4138 325 Size: 1498 Fragments arranged by size: 1498 1255 801 781 445 185 176 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3557 5269 96 Size: 274 80 33 51 1443 1580 1712 138 Fragments arranged by size: 1712 1580 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5271 5303 5271 Size: 32 5279 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5311 XbaI T'CTAG_A Cuts at: 2647 2647 Size: 5311 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5311 XmaI C'CCGG_G Cuts at: 1870 2636 1870 Size: 766 4545 XmnI GAAnn'nnTTC Cuts at: 3440 3440 Size: 5311 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3119 276 Size: 53 83 186 936 1585 2468 Fragments arranged by size: 2468 1585 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI SacII SalI SapI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PfoI PmlI PspXI PsrI PvuII RsrII SacI SanDI SfiI SfoI SrfI SwaI XcmI