FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6213, 201 aa 1>>>pF1KE6213 201 - 201 aa - 201 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1010+/-0.000312; mu= 9.5586+/- 0.020 mean_var=81.0465+/-16.323, 0's: 0 Z-trim(116.9): 96 B-trim: 570 in 1/52 Lambda= 0.142465 statistics sampled from 28332 (28468) to 28332 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.334), width: 16 Scan time: 4.260 The best scores are: opt bits E(85289) NP_037454 (OMIM: 614780,615085) sorting nexin-10 i ( 201) 1365 289.7 2.2e-78 XP_006715775 (OMIM: 614780,615085) PREDICTED: sort ( 201) 1365 289.7 2.2e-78 NP_001305128 (OMIM: 614780,615085) sorting nexin-1 ( 201) 1365 289.7 2.2e-78 NP_001186764 (OMIM: 614780,615085) sorting nexin-1 ( 201) 1365 289.7 2.2e-78 NP_001186766 (OMIM: 614780,615085) sorting nexin-1 ( 198) 1313 279.0 3.6e-75 XP_016867576 (OMIM: 614780,615085) PREDICTED: sort ( 227) 1310 278.4 6.2e-75 NP_001305127 (OMIM: 614780,615085) sorting nexin-1 ( 227) 1310 278.4 6.2e-75 XP_016867574 (OMIM: 614780,615085) PREDICTED: sort ( 227) 1310 278.4 6.2e-75 XP_016867575 (OMIM: 614780,615085) PREDICTED: sort ( 227) 1310 278.4 6.2e-75 XP_016867577 (OMIM: 614780,615085) PREDICTED: sort ( 161) 1072 229.4 2.4e-60 NP_001186767 (OMIM: 614780,615085) sorting nexin-1 ( 117) 769 167.1 1e-41 NP_689450 (OMIM: 614906) sorting nexin-11 isoform ( 270) 604 133.3 3.5e-31 NP_037455 (OMIM: 614906) sorting nexin-11 isoform ( 270) 604 133.3 3.5e-31 XP_011522999 (OMIM: 614906) PREDICTED: sorting nex ( 270) 604 133.3 3.5e-31 XP_005257317 (OMIM: 614906) PREDICTED: sorting nex ( 270) 604 133.3 3.5e-31 XP_005257319 (OMIM: 614906) PREDICTED: sorting nex ( 262) 588 130.0 3.3e-30 NP_001317249 (OMIM: 614906) sorting nexin-11 isofo ( 262) 588 130.0 3.3e-30 NP_001243114 (OMIM: 300883) sorting nexin-12 isofo ( 162) 227 55.7 4.7e-08 NP_037478 (OMIM: 300883) sorting nexin-12 isoform ( 162) 227 55.7 4.7e-08 NP_003786 (OMIM: 605930) sorting nexin-3 isoform a ( 162) 217 53.7 1.9e-07 NP_001243117 (OMIM: 300883) sorting nexin-12 isofo ( 158) 209 52.0 6e-07 NP_001287858 (OMIM: 605930) sorting nexin-3 isofor ( 140) 200 50.1 1.9e-06 XP_016856917 (OMIM: 614904) PREDICTED: sorting nex ( 336) 162 42.5 0.00093 XP_016856916 (OMIM: 614904) PREDICTED: sorting nex ( 387) 162 42.5 0.001 XP_016856915 (OMIM: 614904) PREDICTED: sorting nex ( 387) 162 42.5 0.001 XP_011539866 (OMIM: 614904) PREDICTED: sorting nex ( 387) 162 42.5 0.001 XP_006710741 (OMIM: 614904) PREDICTED: sorting nex ( 387) 162 42.5 0.001 XP_016856914 (OMIM: 614904) PREDICTED: sorting nex ( 387) 162 42.5 0.001 XP_006710740 (OMIM: 614904) PREDICTED: sorting nex ( 422) 162 42.5 0.0011 NP_057060 (OMIM: 614904) sorting nexin-7 isoform a ( 451) 162 42.6 0.0012 >>NP_037454 (OMIM: 614780,615085) sorting nexin-10 isofo (201 aa) initn: 1365 init1: 1365 opt: 1365 Z-score: 1528.2 bits: 289.7 E(85289): 2.2e-78 Smith-Waterman score: 1365; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL 130 140 150 160 170 180 190 200 pF1KE6 GHSSDDSSSHGCKVNTAPQES ::::::::::::::::::::: NP_037 GHSSDDSSSHGCKVNTAPQES 190 200 >>XP_006715775 (OMIM: 614780,615085) PREDICTED: sorting (201 aa) initn: 1365 init1: 1365 opt: 1365 Z-score: 1528.2 bits: 289.7 E(85289): 2.2e-78 Smith-Waterman score: 1365; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL 130 140 150 160 170 180 190 200 pF1KE6 GHSSDDSSSHGCKVNTAPQES ::::::::::::::::::::: XP_006 GHSSDDSSSHGCKVNTAPQES 190 200 >>NP_001305128 (OMIM: 614780,615085) sorting nexin-10 is (201 aa) initn: 1365 init1: 1365 opt: 1365 Z-score: 1528.2 bits: 289.7 E(85289): 2.2e-78 Smith-Waterman score: 1365; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL 130 140 150 160 170 180 190 200 pF1KE6 GHSSDDSSSHGCKVNTAPQES ::::::::::::::::::::: NP_001 GHSSDDSSSHGCKVNTAPQES 190 200 >>NP_001186764 (OMIM: 614780,615085) sorting nexin-10 is (201 aa) initn: 1365 init1: 1365 opt: 1365 Z-score: 1528.2 bits: 289.7 E(85289): 2.2e-78 Smith-Waterman score: 1365; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL 130 140 150 160 170 180 190 200 pF1KE6 GHSSDDSSSHGCKVNTAPQES ::::::::::::::::::::: NP_001 GHSSDDSSSHGCKVNTAPQES 190 200 >>NP_001186766 (OMIM: 614780,615085) sorting nexin-10 is (198 aa) initn: 1310 init1: 1310 opt: 1313 Z-score: 1470.6 bits: 279.0 E(85289): 3.6e-75 Smith-Waterman score: 1313; 97.5% identity (98.0% similar) in 201 aa overlap (1-201:1-198) 10 20 30 40 50 60 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL :.: : :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MMPLQ---EFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL 120 130 140 150 160 170 190 200 pF1KE6 GHSSDDSSSHGCKVNTAPQES ::::::::::::::::::::: NP_001 GHSSDDSSSHGCKVNTAPQES 180 190 >>XP_016867576 (OMIM: 614780,615085) PREDICTED: sorting (227 aa) initn: 1310 init1: 1310 opt: 1310 Z-score: 1466.3 bits: 278.4 E(85289): 6.2e-75 Smith-Waterman score: 1310; 99.5% identity (100.0% similar) in 194 aa overlap (8-201:34-227) 10 20 30 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIH .::::::::::::::::::::::::::::: XP_016 MEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP 130 140 150 160 170 180 160 170 180 190 200 pF1KE6 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES :::::::::::::::::::::::::::::::::::::::::::: XP_016 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES 190 200 210 220 >>NP_001305127 (OMIM: 614780,615085) sorting nexin-10 is (227 aa) initn: 1310 init1: 1310 opt: 1310 Z-score: 1466.3 bits: 278.4 E(85289): 6.2e-75 Smith-Waterman score: 1310; 99.5% identity (100.0% similar) in 194 aa overlap (8-201:34-227) 10 20 30 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIH .::::::::::::::::::::::::::::: NP_001 MEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP 130 140 150 160 170 180 160 170 180 190 200 pF1KE6 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES :::::::::::::::::::::::::::::::::::::::::::: NP_001 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES 190 200 210 220 >>XP_016867574 (OMIM: 614780,615085) PREDICTED: sorting (227 aa) initn: 1310 init1: 1310 opt: 1310 Z-score: 1466.3 bits: 278.4 E(85289): 6.2e-75 Smith-Waterman score: 1310; 99.5% identity (100.0% similar) in 194 aa overlap (8-201:34-227) 10 20 30 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIH .::::::::::::::::::::::::::::: XP_016 MEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP 130 140 150 160 170 180 160 170 180 190 200 pF1KE6 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES :::::::::::::::::::::::::::::::::::::::::::: XP_016 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES 190 200 210 220 >>XP_016867575 (OMIM: 614780,615085) PREDICTED: sorting (227 aa) initn: 1310 init1: 1310 opt: 1310 Z-score: 1466.3 bits: 278.4 E(85289): 6.2e-75 Smith-Waterman score: 1310; 99.5% identity (100.0% similar) in 194 aa overlap (8-201:34-227) 10 20 30 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIH .::::::::::::::::::::::::::::: XP_016 MEGIGCMRHSSLTRQPKLPYRSLASARGGLQEFVSVWVRDPRIQKEDFWHSYIDYEICIH 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE6 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQG 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE6 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP 130 140 150 160 170 180 160 170 180 190 200 pF1KE6 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES :::::::::::::::::::::::::::::::::::::::::::: XP_016 EEDEEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES 190 200 210 220 >>XP_016867577 (OMIM: 614780,615085) PREDICTED: sorting (161 aa) initn: 1072 init1: 1072 opt: 1072 Z-score: 1204.3 bits: 229.4 E(85289): 2.4e-60 Smith-Waterman score: 1072; 100.0% identity (100.0% similar) in 161 aa overlap (41-201:1-161) 20 30 40 50 60 70 pF1KE6 VSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALL :::::::::::::::::::::::::::::: XP_016 MCFTMKTSCVRRRYREFVWLRQRLQSNALL 10 20 30 80 90 100 110 120 130 pF1KE6 VQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDI 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE6 EACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGLGHSSDDSSSH 100 110 120 130 140 150 200 pF1KE6 GCKVNTAPQES ::::::::::: XP_016 GCKVNTAPQES 160 201 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:08:37 2016 done: Tue Nov 8 11:08:37 2016 Total Scan time: 4.260 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]