FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6213, 201 aa 1>>>pF1KE6213 201 - 201 aa - 201 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1751+/-0.00074; mu= 9.0931+/- 0.045 mean_var=73.8290+/-14.733, 0's: 0 Z-trim(109.5): 43 B-trim: 162 in 2/50 Lambda= 0.149266 statistics sampled from 10863 (10902) to 10863 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.335), width: 16 Scan time: 1.560 The best scores are: opt bits E(32554) CCDS5399.1 SNX10 gene_id:29887|Hs108|chr7 ( 201) 1365 302.6 1e-82 CCDS56470.1 SNX10 gene_id:29887|Hs108|chr7 ( 117) 769 174.2 2.7e-44 CCDS11526.1 SNX11 gene_id:29916|Hs108|chr17 ( 270) 604 138.8 2.9e-33 CCDS82152.1 SNX11 gene_id:29916|Hs108|chr17 ( 262) 588 135.4 3.1e-32 >>CCDS5399.1 SNX10 gene_id:29887|Hs108|chr7 (201 aa) initn: 1365 init1: 1365 opt: 1365 Z-score: 1598.5 bits: 302.6 E(32554): 1e-82 Smith-Waterman score: 1365; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL 130 140 150 160 170 180 190 200 pF1KE6 GHSSDDSSSHGCKVNTAPQES ::::::::::::::::::::: CCDS53 GHSSDDSSSHGCKVNTAPQES 190 200 >>CCDS56470.1 SNX10 gene_id:29887|Hs108|chr7 (117 aa) initn: 769 init1: 769 opt: 769 Z-score: 908.7 bits: 174.2 E(32554): 2.7e-44 Smith-Waterman score: 769; 100.0% identity (100.0% similar) in 117 aa overlap (85-201:1-117) 60 70 80 90 100 110 pF1KE6 REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSD :::::::::::::::::::::::::::::: CCDS56 MNNRQHVDQRRQGLEDFLRKVLQNALLLSD 10 20 30 120 130 140 150 160 170 pF1KE6 SSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 SSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSE 40 50 60 70 80 90 180 190 200 pF1KE6 SSSSGLGHSSDDSSSHGCKVNTAPQES ::::::::::::::::::::::::::: CCDS56 SSSSGLGHSSDDSSSHGCKVNTAPQES 100 110 >>CCDS11526.1 SNX11 gene_id:29916|Hs108|chr17 (270 aa) initn: 588 init1: 371 opt: 604 Z-score: 710.7 bits: 138.8 E(32554): 2.9e-33 Smith-Waterman score: 604; 54.3% identity (83.3% similar) in 162 aa overlap (1-162:7-167) 10 20 30 40 50 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRY : .:..:: ..: :.:::.:.: :.::.::.: .:::: :: ::::::::: CCDS11 MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRY 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 REFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSD :::::::..:: :: :: .::::.:. ::. .. . ...:::::. ::.::::...:::: CCDS11 REFVWLRKQLQRNAGLVPVPELPGKSTFFGTSD-EFIEKRRQGLQHFLEKVLQSVVLLSD 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 SSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSE :.:::::::.:. .:::::.:.. ..: .:: ..:. : . .:... CCDS11 SQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPK 120 130 140 150 160 170 180 190 200 pF1KE6 SSSSGLGHSSDDSSSHGCKVNTAPQES CCDS11 SCCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKE 180 190 200 210 220 230 >>CCDS82152.1 SNX11 gene_id:29916|Hs108|chr17 (262 aa) initn: 572 init1: 355 opt: 588 Z-score: 692.3 bits: 135.4 E(32554): 3.1e-32 Smith-Waterman score: 588; 54.1% identity (84.1% similar) in 157 aa overlap (6-162:4-159) 10 20 30 40 50 60 pF1KE6 MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWL ...: ..: :.:::.:.: :.::.::.: .:::: :: ::::::::::::::: CCDS82 MVCREQEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWL 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 RQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLF :..:: :: :: .::::.:. ::. .. . ...:::::. ::.::::...:::::.:::: CCDS82 RKQLQRNAGLVPVPELPGKSTFFGTSD-EFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLF 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE6 LQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEEDEEGKKENDIDYDSESSSSGL :::.:. .:::::.:.. ..: .:: ..:. : . .:... CCDS82 LQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKSCCFLP 120 130 140 150 160 170 190 200 pF1KE6 GHSSDDSSSHGCKVNTAPQES CCDS82 RSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSLESPTLPPLSSPLCCDFGRPKEGTSTLQ 180 190 200 210 220 230 201 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:08:36 2016 done: Tue Nov 8 11:08:36 2016 Total Scan time: 1.560 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]