FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3915, 115 aa 1>>>pF1KE3915 115 - 115 aa - 115 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6049+/-0.000281; mu= 9.5514+/- 0.018 mean_var=73.5277+/-14.818, 0's: 0 Z-trim(119.6): 3 B-trim: 1867 in 1/50 Lambda= 0.149571 statistics sampled from 33725 (33728) to 33725 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.395), width: 16 Scan time: 5.000 The best scores are: opt bits E(85289) NP_004633 (OMIM: 602198) cyclin-dependent kinase 2 ( 115) 736 166.9 6.5e-42 NP_001257362 (OMIM: 602198) cyclin-dependent kinas ( 87) 556 128.0 2.6e-30 NP_001257363 (OMIM: 602198) cyclin-dependent kinas ( 87) 556 128.0 2.6e-30 >>NP_004633 (OMIM: 602198) cyclin-dependent kinase 2-ass (115 aa) initn: 736 init1: 736 opt: 736 Z-score: 873.4 bits: 166.9 E(85289): 6.5e-42 Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115) 10 20 30 40 50 60 pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS 70 80 90 100 110 >>NP_001257362 (OMIM: 602198) cyclin-dependent kinase 2- (87 aa) initn: 556 init1: 556 opt: 556 Z-score: 665.3 bits: 128.0 E(85289): 2.6e-30 Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 87 aa overlap (29-115:1-87) 10 20 30 40 50 60 pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ :::::::::::::::::::::::::::::::: NP_001 MATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ 10 20 30 70 80 90 100 110 pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS 40 50 60 70 80 >>NP_001257363 (OMIM: 602198) cyclin-dependent kinase 2- (87 aa) initn: 556 init1: 556 opt: 556 Z-score: 665.3 bits: 128.0 E(85289): 2.6e-30 Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 87 aa overlap (29-115:1-87) 10 20 30 40 50 60 pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ :::::::::::::::::::::::::::::::: NP_001 MATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ 10 20 30 70 80 90 100 110 pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS 40 50 60 70 80 115 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:47:27 2016 done: Sun Nov 6 01:47:28 2016 Total Scan time: 5.000 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]