FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3915, 115 aa 1>>>pF1KE3915 115 - 115 aa - 115 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7041+/-0.000621; mu= 8.9216+/- 0.038 mean_var=70.5224+/-13.937, 0's: 0 Z-trim(112.1): 7 B-trim: 62 in 1/50 Lambda= 0.152725 statistics sampled from 12882 (12885) to 12882 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.396), width: 16 Scan time: 1.650 The best scores are: opt bits E(32554) CCDS9245.1 CDK2AP1 gene_id:8099|Hs108|chr12 ( 115) 736 170.1 2.7e-43 CCDS58289.1 CDK2AP1 gene_id:8099|Hs108|chr12 ( 87) 556 130.4 1.8e-31 CCDS8169.1 CDK2AP2 gene_id:10263|Hs108|chr11 ( 126) 418 100.0 3.6e-22 >>CCDS9245.1 CDK2AP1 gene_id:8099|Hs108|chr12 (115 aa) initn: 736 init1: 736 opt: 736 Z-score: 890.8 bits: 170.1 E(32554): 2.7e-43 Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115) 10 20 30 40 50 60 pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS 70 80 90 100 110 >>CCDS58289.1 CDK2AP1 gene_id:8099|Hs108|chr12 (87 aa) initn: 556 init1: 556 opt: 556 Z-score: 678.3 bits: 130.4 E(32554): 1.8e-31 Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 87 aa overlap (29-115:1-87) 10 20 30 40 50 60 pF1KE3 MSYKPNLAAHMPAAALNAAGSVHSPSTSMATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ :::::::::::::::::::::::::::::::: CCDS58 MATSSQYRQLLSDYGPPSLGYTQGTGNSQVPQ 10 20 30 70 80 90 100 110 pF1KE3 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 SKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNARS 40 50 60 70 80 >>CCDS8169.1 CDK2AP2 gene_id:10263|Hs108|chr11 (126 aa) initn: 407 init1: 314 opt: 418 Z-score: 511.5 bits: 100.0 E(32554): 3.6e-22 Smith-Waterman score: 422; 57.9% identity (78.6% similar) in 126 aa overlap (1-115:1-126) 10 20 30 40 50 pF1KE3 MSYKPNLAA--HMPAAALNA------AGSVHSPSTSM-ATSSQYRQLLSDYGPPSLGYTQ ::::: : :... . .::: ::: :. .... .: :..:.::::.::.: CCDS81 MSYKPIAPAPSSTPGSSTPGPGTPVPTGSVPSPSGSVPGAGAPFRPLFNDFGPPSMGYVQ 10 20 30 40 50 60 60 70 80 90 100 pF1KE3 GTG--NSQVPQSKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAET . ..: :: :..::..:::.::::::::::::::::::::::::::.::::::::: CCDS81 AMKPPGAQGSQSTYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLAET 70 80 90 100 110 120 110 pF1KE3 ERNARS :::::. CCDS81 ERNART 115 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 01:47:26 2016 done: Sun Nov 6 01:47:27 2016 Total Scan time: 1.650 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]