FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1500, 767 aa 1>>>pF1KE1500 767 - 767 aa - 767 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 15.2800+/-0.00175; mu= -26.4924+/- 0.102 mean_var=604.1156+/-129.627, 0's: 0 Z-trim(107.7): 185 B-trim: 0 in 0/52 Lambda= 0.052181 statistics sampled from 9622 (9753) to 9622 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.3), width: 16 Scan time: 4.300 The best scores are: opt bits E(32554) CCDS6860.1 GOLGA1 gene_id:2800|Hs108|chr9 ( 767) 4764 374.7 3e-103 >>CCDS6860.1 GOLGA1 gene_id:2800|Hs108|chr9 (767 aa) initn: 4764 init1: 4764 opt: 4764 Z-score: 1967.1 bits: 374.7 E(32554): 3e-103 Smith-Waterman score: 4764; 99.7% identity (99.9% similar) in 767 aa overlap (1-767:1-767) 10 20 30 40 50 60 pF1KE1 MFAKLKKKIAEETAVAQRPGGATRIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 MFAKLKKKIAEETAVAQRPGGATRIPRSVSKESVASMGADSGDDFASDGSSSREDLSSQL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 LRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 LRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSSMRKFQEQNETFQANRAKM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 AEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 AEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEMDELEGFQQQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LSKIKHMLLKKEESLGKMEQELEARTRELSRTQEELMNSNQMSSDLSQKLEELQRHYSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 LSKIKHMLLKKEESLGKMEQELEARTRELSRTQEELMNSNQMSSDLSQKLEELQRHYSTL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 EEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHLQEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 EEQRDHVIASKTGAESKITALEQKEQELQALIQQLSIDLQKVTAETQEKEDVITHLQEKV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 ASLEKRLEQNLSGEEHVQELLKEKTLAEQNLEDTRQQLLAARSSQAKAINTLETRVRELE ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: CCDS68 ASLEKRLEQNLSGEEHLQELLKEKTLAEQNLEDTRQQLLAARSSQAKAINTLETRVRELE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 QTLQASEEQLQQSKGIVAAQETQIQELAAANQESSHVQQQALALEQQFLERTQALEAQIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 QTLQASEEQLQQSKGIVAAQETQIQELAAANQESSHVQQQALALEQQFLERTQALEAQIV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 ALERMRAADQTTAEQGMRQLEQENAALKECRNEYERSLQNHQFELKKLKEEWSQREIVSV :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 ALERTRAADQTTAEQGMRQLEQENAALKECRNEYERSLQNHQFELKKLKEEWSQREIVSV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 AMAQALEEVRKQREEFQQQAANLTAIIDEKEQNLREKTEVLLQKEQEILQLERGHNSALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 AMAQALEEVRKQREEFQQQAANLTAIIDEKEQNLREKTEVLLQKEQEILQLERGHNSALL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 QIHQLQAELEALRTLKAEEAAVVAEQEDLLRLRGPLQAEALSVNESHVTSRAMQDPVFQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 QIHQLQAELEALRTLKAEEAAVVAEQEDLLRLRGPLQAEALSVNESHVTSRAMQDPVFQL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 PTAGRTPNGEVGAMDLTQLQKEKQDLEQQLLEKNKTIKQMQQRMLELRKTLQKELKIRPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 PTAGRTPNGEVGAMDLTQLQKEKQDLEQQLLEKNKTIKQMQQRMLELRKTLQKELKIRPD 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE1 NELFEVREKPGPEMANMAPSVTNNTDLTDAREINFEYLKHVVLKFMSCRESEAFHLIKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 NELFEVREKPGPEMANMAPSVTNNTDLTDAREINFEYLKHVVLKFMSCRESEAFHLIKAV 670 680 690 700 710 720 730 740 750 760 pF1KE1 SVLLNFSQEEENMLKETLEYKMSWFGSKPAPKGSIRPSISNPRIPWS ::::::::::::::::::::::::::::::::::::::::::::::: CCDS68 SVLLNFSQEEENMLKETLEYKMSWFGSKPAPKGSIRPSISNPRIPWS 730 740 750 760 767 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:22:38 2016 done: Sun Nov 6 22:22:39 2016 Total Scan time: 4.300 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]