FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3920, 272 aa 1>>>pF1KE3920 272 - 272 aa - 272 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8932+/-0.000754; mu= 12.2570+/- 0.046 mean_var=72.3764+/-14.305, 0's: 0 Z-trim(108.9): 43 B-trim: 0 in 0/50 Lambda= 0.150756 statistics sampled from 10493 (10536) to 10493 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.324), width: 16 Scan time: 2.260 The best scores are: opt bits E(32554) CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 ( 272) 1790 398.1 3.5e-111 CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 ( 229) 1297 290.8 5.7e-79 CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 291 72.1 4.3e-13 CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 ( 428) 274 68.5 9.4e-12 CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 267 66.8 1.7e-11 CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 ( 325) 260 65.4 6.1e-11 >>CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13 (272 aa) initn: 1790 init1: 1790 opt: 1790 Z-score: 2109.6 bits: 398.1 E(32554): 3.5e-111 Smith-Waterman score: 1790; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVSSEDKTECY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 GSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVSSEDKTECY 190 200 210 220 230 240 250 260 270 pF1KE3 SFERIKSPEVLITNETPKPETIIIPEQSQIKK :::::::::::::::::::::::::::::::: CCDS94 SFERIKSPEVLITNETPKPETIIIPEQSQIKK 250 260 270 >>CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13 (229 aa) initn: 1343 init1: 1297 opt: 1297 Z-score: 1531.3 bits: 290.8 E(32554): 5.7e-79 Smith-Waterman score: 1297; 99.5% identity (99.5% similar) in 195 aa overlap (1-195:1-195) 10 20 30 40 50 60 pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVSSEDKTECY ::::::::::::: : CCDS41 GSDSTTDNQTGVRLVCNGVISAHHNLRLWGSSDSPASASRVAGITGMFL 190 200 210 220 >>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa) initn: 294 init1: 266 opt: 291 Z-score: 348.6 bits: 72.1 E(32554): 4.3e-13 Smith-Waterman score: 291; 35.5% identity (64.5% similar) in 152 aa overlap (7-157:14-160) 10 20 30 40 50 pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDR :::::::...:: ..:. ..: : :. :. : . :. :.:: CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 DGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLN-PYLLQPRPALVEV :: :: ..:.:::: .: :: .:... :..:: ::... :.. :: : : : .. :: CCDS28 DGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 HFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPS :: . : ... :. . .. ..:. :. : .:.: CCDS28 VELSST-----RKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQV 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YHDLVFQCGSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVS CCDS28 SFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTVEHNWTFCRLARKT 180 190 200 210 220 230 >>CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5 (428 aa) initn: 263 init1: 171 opt: 274 Z-score: 324.5 bits: 68.5 E(32554): 9.4e-12 Smith-Waterman score: 274; 42.7% identity (69.1% similar) in 110 aa overlap (2-107:22-131) 10 20 30 pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARML----D : :.: :::::... :: ::. ..: : : .:. : CCDS34 MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRD 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 GRDQEFKMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVD .. : :..:.:::: :: .:::.:: .:..:: .: . ::.::: ...: .:: CCDS34 TANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVK 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 LLNPYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNF ::.: .. : CCDS34 LLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREG 130 140 150 160 170 180 >>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa) initn: 287 init1: 263 opt: 267 Z-score: 319.7 bits: 66.8 E(32554): 1.7e-11 Smith-Waterman score: 267; 44.6% identity (75.0% similar) in 92 aa overlap (7-98:5-96) 10 20 30 40 50 60 pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSF .:::::::..:: ..:. .:: : :. :..:. . :. :.:::: .: . CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRY 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 ILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQ ::.:::: .: :: .:... :.::: ::... :.. : CCDS31 ILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQ 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 AFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQC CCDS31 RVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHL 120 130 140 150 160 170 >>CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13 (325 aa) initn: 292 init1: 179 opt: 260 Z-score: 309.9 bits: 65.4 E(32554): 6.1e-11 Smith-Waterman score: 260; 46.2% identity (67.9% similar) in 106 aa overlap (5-107:34-137) 10 20 30 pF1KE3 MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARM ..: :::::....:: :. . : : : :: CCDS94 ADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLLWRM 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE3 LDGRD-QEF-KMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELR . .. ::. . :..:.:::: :: .:::.:: ::.:: : . :::::: ..:: CCDS94 FTQQQPQELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAEYFELP 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE3 SLVDLLN-PYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPT :: :. : :: : CCDS94 ELVRRLGAPQ--QPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPTLEL 130 140 150 160 170 180 272 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:56:59 2016 done: Sun Nov 6 08:56:59 2016 Total Scan time: 2.260 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]