Restriction map for
pFN21AE1408
(Circular) (Six-base) MAPSORT of: pFN21AE1408.seq Check: 4564 from: 1 to: 5146
pFN21AE1408 5146 bp
With 182 enzymes: SgfI *
August 16, 2010 14:46 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2956 278
Size: 53 83 186 936 1420 2468
Fragments arranged by size:
2468 1420 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2436 2489 1937
Size: 499 53 4594
Fragments arranged by size:
4594 499 53
Acc65I G'GTAC_C
Cuts at: 2098 2467 2098
Size: 369 4777
AclI AA'CG_TT
Cuts at: 1563 3273 3646 1563
Size: 1710 373 3063
Fragments arranged by size:
3063 1710 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3209 4593 4861 1632
Size: 1577 1384 268 1917
Fragments arranged by size:
1917 1577 1384 268
AfeI AGC'GCT
Cuts at: 2141 2141
Size: 5146
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4949
AflIII A'CryG_T
Cuts at: 1203 2107 4045 5022 1203
Size: 904 1938 977 1327
Fragments arranged by size:
1938 1327 977 904
AgeI A'CCGG_T
Cuts at: 3977 3977
Size: 5146
AhdI GACnn_n'nnGTC
Cuts at: 3875 3875
Size: 5146
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5146
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5146
AlwNI CAG_nnn'CTG
Cuts at: 2889 4461 2889
Size: 1572 3574
ApaLI G'TGCA_C
Cuts at: 3203 4359 3203
Size: 1156 3990
ApoI r'AATT_y
Cuts at: 1493 2455 2681 2833 4942 1493
Size: 962 226 152 2109 1697
Fragments arranged by size:
2109 1697 962 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3700 160
Size: 872 2668 1606
Fragments arranged by size:
2668 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5146
AvaI C'yCGr_G
Cuts at: 1870 1943 2471 1870
Size: 73 528 4545
Fragments arranged by size:
4545 528 73
BamHI G'GATC_C
Cuts at: 2476 2843 2476
Size: 367 4779
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2098 2467 3922 618
Size: 325 217 627 311 369 1455 1842
Fragments arranged by size:
1842 1455 627 369 325 311 217
BanII G_rGCy'C
Cuts at: 1391 2355 2465 1391
Size: 964 110 4072
Fragments arranged by size:
4072 964 110
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4175
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3337 3371 1903
Size: 34 1400 34 3678
Fragments arranged by size:
3678 1400 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3038 4248 3038
Size: 1210 3936
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5146
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3757 136
Size: 107 122 71 631 605 2085 1525
Fragments arranged by size:
2085 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5141 5141
Size: 5146
BlpI GC'TnA_GC
Cuts at: 2563 2563
Size: 5146
Bme1580I G_kGCm'C
Cuts at: 1790 2123 3207 4363 1790
Size: 333 1084 1156 2573
Fragments arranged by size:
2573 1156 1084 333
BmgBI CAC'GTC
Cuts at: 1318 2293 1318
Size: 975 4171
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2877 3835 442
Size: 416 53 83 399 24 1460 958 1753
Fragments arranged by size:
1753 1460 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5146
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2337 2339 3806 1239
Size: 1098 2 1467 2579
Fragments arranged by size:
2579 1467 1098 2
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3271 4136 4434 3271
Size: 865 298 3983
Fragments arranged by size:
3983 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3809 882
Size: 617 2310 2219
Fragments arranged by size:
2310 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2937 493
Size: 711 1733 2702
Fragments arranged by size:
2702 1733 711
BsaBI GATnn'nnATC
Cuts at: 5140 5140
Size: 5146
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2953 3335 3970 275
Size: 53 83 186 936 1420 382 635 1451
Fragments arranged by size:
1451 1420 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3579 3977 4251 4398 4809 3579
Size: 398 274 147 411 3916
Fragments arranged by size:
3916 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4921
Fragments arranged by size:
4921 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2363 2414 1186
Size: 1177 51 3918
Fragments arranged by size:
3918 1177 51
BseYI C'CCAG_C
Cuts at: 4349 4845 4349
Size: 496 4650
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2596 3357 4385 1540
Size: 275 186 595 761 1028 2301
Fragments arranged by size:
2301 1028 761 595 275 186
BsiHKAI G_wGCw'C
Cuts at: 2355 3207 3292 4363 2355
Size: 852 85 1071 3138
Fragments arranged by size:
3138 1071 852 85
BsmI GAATG_Cn'
Cuts at: 2657 2750 2657
Size: 93 5053
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2123 2355 2465 3207 3292 4363 1391
Size: 399 333 232 110 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 333 232 110 85
BspEI T'CCGG_A
Cuts at: 4809 4809
Size: 5146
BspHI T'CATG_A
Cuts at: 3035 4765 3035
Size: 1730 3416
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2160 2501 844
Size: 1316 341 3489
Fragments arranged by size:
3489 1316 341
BsrBI CCG'CTC
Cuts at: 1394 1823 3033 1394
Size: 429 1210 3507
Fragments arranged by size:
3507 1210 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3641 3815 65
Size: 1183 2393 174 1396
Fragments arranged by size:
2393 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3790 3977 1700
Size: 110 1980 187 2869
Fragments arranged by size:
2869 1980 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5146
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5146
BssSI C'ACGA_G
Cuts at: 3206 4218 3206
Size: 1012 4134
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5146
BstBI TT'CG_AA
Cuts at: 3950 3950
Size: 5146
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5146
BstYI r'GATC_y
Cuts at: 1972 2476 2843 3228 3245 4697 4783 4795 5141
Size: 504 367 385 17 1452 86 12 346
Cuts at: 5141 1972
Size: 1977
Fragments arranged by size:
1977 1452 504 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2224 513
Size: 552 1159 3435
Fragments arranged by size:
3435 1159 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4407
Fragments arranged by size:
4407 683 56
BtsI GCAGTG_nn'
Cuts at: 2662 3456 3476 2662
Size: 794 20 4332
Fragments arranged by size:
4332 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5146
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5111
DraI TTT'AAA
Cuts at: 2450 2450
Size: 5146
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4153 809
Size: 507 2837 1802
Fragments arranged by size:
2837 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2020 2129 2169
Size: 54 1425 50 275 18 190 109 40
Cuts at: 2169 2593 3482 5111 8
Size: 424 889 1629 43
Fragments arranged by size:
1629 1425 889 424 275 190 109 54
50 43 40 18
EagI C'GGCC_G
Cuts at: 1537 1812 2593 1537
Size: 275 781 4090
Fragments arranged by size:
4090 781 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3076 1353
Size: 1723 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3733 4107 4253 387
Size: 1064 138 2144 374 146 1280
Fragments arranged by size:
2144 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2353 2353
Size: 5146
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2337 2339 3209 3806 4593 4861 1239
Size: 393 705 2 870 597 787 268 1524
Fragments arranged by size:
1524 870 787 705 597 393 268 2
EcoO109I rG'GnC_Cy
Cuts at: 2229 2229
Size: 5146
EcoRI G'AATT_C
Cuts at: 2455 2833 2455
Size: 378 4768
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2392 2392
Size: 5146
FspI TGC'GCA
Cuts at: 3652 3652
Size: 5146
HaeII r_GCGC'y
Cuts at: 1678 2143 4293 1678
Size: 465 2150 2531
Fragments arranged by size:
2531 2150 465
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3787 3819 3861 3893 1373
Size: 32 135 32 2215 32 42 32 2626
Fragments arranged by size:
2626 2215 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2490 2736 669
Size: 988 281 552 246 3079
Fragments arranged by size:
3079 988 552 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5146
HpaI GTT'AAC
Cuts at: 2736 2736
Size: 5146
KpnI G_GTAC'C
Cuts at: 2102 2471 2102
Size: 369 4777
MfeI C'AATT_G
Cuts at: 2745 2745
Size: 5146
MluI A'CGCG_T
Cuts at: 5022 5022
Size: 5146
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4260 4444 1305
Size: 2955 184 2007
Fragments arranged by size:
2955 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2022 10
Size: 54 1425 343 190 3134
Fragments arranged by size:
3134 1425 343 190 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2223 2295 2331 3104 3463 3622 518
Size: 648 1057 72 36 773 359 159 2042
Fragments arranged by size:
2042 1057 773 648 359 159 72 36
MspA1I CmG'CkG
Cuts at: 1606 2125 2562 3239 4387 4632 1606
Size: 519 437 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 519 437 245
NcoI C'CATG_G
Cuts at: 513 1065 2224 513
Size: 552 1159 3435
Fragments arranged by size:
3435 1159 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5146
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5146
NotI GC'GGCC_GC
Cuts at: 2593 2593
Size: 5146
NspI r_CATG'y
Cuts at: 1132 1229 2111 2504 4049 1132
Size: 97 882 393 1545 2229
Fragments arranged by size:
2229 1545 882 393 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5146
PciI A'CATG_T
Cuts at: 2107 4045 2107
Size: 1938 3208
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5146
PmeI GTTT'AAAC
Cuts at: 2450 2450
Size: 5146
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3215 3247 4728 4760 3215
Size: 32 1481 32 3601
Fragments arranged by size:
3601 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2229 2229
Size: 5146
PshAI GACnn'nnGTC
Cuts at: 1613 2154 1613
Size: 541 4605
PsiI TTA'TAA
Cuts at: 2716 2716
Size: 5146
PstI C_TGCA'G
Cuts at: 830 2498 830
Size: 1668 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5146
SacI G_AGCT'C
Cuts at: 2355 2355
Size: 5146
SalI G'TCGA_C
Cuts at: 1936 2488 1936
Size: 552 4594
SbfI CC_TGCA'GG
Cuts at: 2498 2498
Size: 5146
ScaI AGT'ACT
Cuts at: 3394 5106 3394
Size: 1712 3434
SfcI C'TryA_G
Cuts at: 826 1045 2043 2494 3629 4310 4501 826
Size: 219 998 451 1135 681 191 1471
Fragments arranged by size:
1471 1135 998 681 451 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5146
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5146
SmaI CCC'GGG
Cuts at: 1872 2473 1872
Size: 601 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3250 4151 4413 820
Size: 197 926 1307 901 262 1553
Fragments arranged by size:
1553 1307 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2937 493
Size: 2444 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5146
SphI G_CATG'C
Cuts at: 1132 2504 1132
Size: 1372 3774
SspI AAT'ATT
Cuts at: 5 52 3070 5
Size: 47 3018 2081
Fragments arranged by size:
3018 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5146
StyI C'CwwG_G
Cuts at: 513 1065 2224 2585 513
Size: 552 1159 361 3074
Fragments arranged by size:
3074 1159 552 361
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3173 3190 3343 3528 3973 325
Size: 1255 1593 17 153 185 445 1498
Fragments arranged by size:
1593 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3392 5104 96
Size: 274 80 33 51 1443 1415 1712 138
Fragments arranged by size:
1712 1443 1415 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2262 2294 5106 5138 2262
Size: 32 2812 32 2270
Fragments arranged by size:
2812 2270 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5146
XbaI T'CTAG_A
Cuts at: 2482 2482
Size: 5146
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5146
XmaI C'CCGG_G
Cuts at: 1870 2471 1870
Size: 601 4545
XmnI GAAnn'nnTTC
Cuts at: 3275 3275
Size: 5146
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2954 276
Size: 53 83 186 936 1420 2468
Fragments arranged by size:
2468 1420 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AfeI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI
Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI
SacI SalI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoNI EcoRV FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI
PsrI PvuII RsrII SacII SanDI SapI SexAI SfiI
SfoI SrfI SwaI XcmI