FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2161, 121 aa 1>>>pF1KE2161 121 - 121 aa - 121 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2815+/-0.000251; mu= 11.2857+/- 0.016 mean_var=68.5133+/-13.595, 0's: 0 Z-trim(121.5): 2 B-trim: 0 in 0/55 Lambda= 0.154948 statistics sampled from 38234 (38236) to 38234 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.448), width: 16 Scan time: 5.260 The best scores are: opt bits E(85289) NP_037383 (OMIM: 162330,614839) tachykinin-3 isofo ( 121) 801 186.7 7.8e-48 NP_001171525 (OMIM: 162330,614839) tachykinin-3 is ( 103) 509 121.4 3.1e-28 >>NP_037383 (OMIM: 162330,614839) tachykinin-3 isoform 1 (121 aa) initn: 801 init1: 801 opt: 801 Z-score: 979.7 bits: 186.7 E(85289): 7.8e-48 Smith-Waterman score: 801; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121) 10 20 30 40 50 60 pF1KE2 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA 70 80 90 100 110 120 pF1KE2 E : NP_037 E >>NP_001171525 (OMIM: 162330,614839) tachykinin-3 isofor (103 aa) initn: 506 init1: 506 opt: 509 Z-score: 628.0 bits: 121.4 E(85289): 3.1e-28 Smith-Waterman score: 618; 84.3% identity (85.1% similar) in 121 aa overlap (1-121:1-103) 10 20 30 40 50 60 pF1KE2 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRIMLLFTAILAFSLAQSFGAVCKEPQEEVVPGGGRSKRDPDLYQLLQRLFKSHSSLEGL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LKALSQASTDPKESTSPEKRDMHDFFVGLMGKRSVQPDSPTDVNQENVPSFGILKYPPRA :::::::::::::::::::. :::::::::::::::::::::: NP_001 LKALSQASTDPKESTSPEKH------------------SPTDVNQENVPSFGILKYPPRA 70 80 90 100 pF1KE2 E : NP_001 E 121 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:24:21 2016 done: Sun Nov 6 22:24:22 2016 Total Scan time: 5.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]