FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5202, 205 aa
  1>>>pF1KE5202 205 - 205 aa - 205 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6245+/-0.00107; mu= 2.9843+/- 0.064
 mean_var=135.6814+/-26.465, 0's: 0 Z-trim(107.4): 19  B-trim: 0 in 0/50
 Lambda= 0.110107
 statistics sampled from 9577 (9580) to 9577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.294), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS3782.1 MND1 gene_id:84057|Hs108|chr4           ( 205) 1329 222.1 1.8e-58
CCDS75202.1 MND1 gene_id:84057|Hs108|chr4          ( 122)  749 129.9 6.4e-31


>>CCDS3782.1 MND1 gene_id:84057|Hs108|chr4                (205 aa)
 initn: 1329 init1: 1329 opt: 1329  Z-score: 1163.1  bits: 222.1 E(32554): 1.8e-58
Smith-Waterman score: 1329; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205)

               10        20        30        40        50        60
pF1KE5 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
              130       140       150       160       170       180

              190       200     
pF1KE5 KRKFGFEENKIDRTFGIPEDFDYID
       :::::::::::::::::::::::::
CCDS37 KRKFGFEENKIDRTFGIPEDFDYID
              190       200     

>>CCDS75202.1 MND1 gene_id:84057|Hs108|chr4               (122 aa)
 initn: 749 init1: 749 opt: 749  Z-score: 668.5  bits: 129.9 E(32554): 6.4e-31
Smith-Waterman score: 749; 95.9% identity (98.4% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KE5 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ..
CCDS75 DCERIGTSNYYWAFPSKALHARKHKLEVLESQLSEGSQKHASLQKSIEKAKIGRCETAKQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TRLAKELSSLRDQREQLKAEVEKYKDCDPQVVEEIRQANKVAKEAANRWTDNIFAIKSWA
        .                                                          
CCDS75 IK                                                          
                                                                   




205 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:28:29 2016 done: Mon Nov  7 22:28:29 2016
 Total Scan time:  1.830 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]