(Circular) (Six-base) MAPSORT of: pFN21AE2403.seq Check: 7524 from: 1 to: 5341 pFN21AE2403 5341 bp With 182 enzymes: SgfI * February 28, 2012 14:42 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3151 278 Size: 53 83 186 936 1615 2468 Fragments arranged by size: 2468 1615 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2038 2325 2684 1937 Size: 101 287 359 4594 Fragments arranged by size: 4594 359 287 101 Acc65I G'GTAC_C Cuts at: 2662 2662 Size: 5341 AclI AA'CG_TT Cuts at: 1563 3468 3841 1563 Size: 1905 373 3063 Fragments arranged by size: 3063 1905 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2193 3404 4788 5056 1632 Size: 561 1211 1384 268 1917 Fragments arranged by size: 1917 1384 1211 561 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5144 AflIII A'CryG_T Cuts at: 1203 4240 5217 1203 Size: 3037 977 1327 Fragments arranged by size: 3037 1327 977 AgeI A'CCGG_T Cuts at: 4172 4172 Size: 5341 AhdI GACnn_n'nnGTC Cuts at: 4070 4070 Size: 5341 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5341 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5341 AlwNI CAG_nnn'CTG Cuts at: 3084 4656 3084 Size: 1572 3769 ApaLI G'TGCA_C Cuts at: 2194 3398 4554 2194 Size: 1204 1156 2981 Fragments arranged by size: 2981 1204 1156 ApoI r'AATT_y Cuts at: 1493 2650 2876 3028 5137 1493 Size: 1157 226 152 2109 1697 Fragments arranged by size: 2109 1697 1157 226 152 AseI AT'TA_AT Cuts at: 160 1032 3895 160 Size: 872 2863 1606 Fragments arranged by size: 2863 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5341 AvaI C'yCGr_G Cuts at: 1870 1943 2666 1870 Size: 73 723 4545 Fragments arranged by size: 4545 723 73 BamHI G'GATC_C Cuts at: 2068 2671 3038 2068 Size: 603 367 4371 Fragments arranged by size: 4371 603 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2662 4117 618 Size: 325 217 627 875 1455 1842 Fragments arranged by size: 1842 1455 875 627 325 217 BanII G_rGCy'C Cuts at: 1391 2660 1391 Size: 1269 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4370 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3532 3566 1903 Size: 34 1595 34 3678 Fragments arranged by size: 3678 1595 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3233 4443 3233 Size: 1210 4131 BclI T'GATC_A Cuts at: 1548 2149 1548 Size: 601 4740 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2080 3952 136 Size: 107 122 71 631 605 408 1872 1525 Fragments arranged by size: 1872 1525 631 605 408 122 107 71 BglII A'GATC_T Cuts at: 2614 5336 2614 Size: 2722 2619 BlpI GC'TnA_GC Cuts at: 2758 2758 Size: 5341 Bme1580I G_kGCm'C Cuts at: 1790 2198 3402 4558 1790 Size: 408 1204 1156 2573 Fragments arranged by size: 2573 1204 1156 408 BmgBI CAC'GTC Cuts at: 1318 2155 1318 Size: 837 4504 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2176 3072 4030 Size: 416 53 83 399 24 759 896 958 Cuts at: 4030 442 Size: 1753 Fragments arranged by size: 1753 958 896 759 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5341 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2319 2332 2432 4001 1239 Size: 1080 13 100 1569 2579 Fragments arranged by size: 2579 1569 1080 100 13 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2041 3466 4331 4629 2041 Size: 1425 865 298 2753 Fragments arranged by size: 2753 1425 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4004 882 Size: 617 2505 2219 Fragments arranged by size: 2505 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2503 3132 493 Size: 711 1299 629 2702 Fragments arranged by size: 2702 1299 711 629 BsaBI GATnn'nnATC Cuts at: 5335 5335 Size: 5341 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3148 3530 4165 275 Size: 53 83 186 936 1615 382 635 1451 Fragments arranged by size: 1615 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3774 4172 4446 4593 5004 3774 Size: 398 274 147 411 4111 Fragments arranged by size: 4111 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2226 2256 1178 Size: 30 165 30 823 30 4263 Fragments arranged by size: 4263 823 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5341 BseYI C'CCAG_C Cuts at: 2206 4544 5040 2206 Size: 2338 496 2507 Fragments arranged by size: 2507 2338 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4768 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2791 3552 4580 1540 Size: 275 186 790 761 1028 2301 Fragments arranged by size: 2301 1028 790 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2198 3402 3487 4558 2198 Size: 1204 85 1071 2981 Fragments arranged by size: 2981 1204 1071 85 BsmI GAATG_Cn' Cuts at: 2852 2945 2852 Size: 93 5248 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2198 2660 3402 3487 4558 1391 Size: 399 408 462 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 462 408 399 85 BspEI T'CCGG_A Cuts at: 5004 5004 Size: 5341 BspHI T'CATG_A Cuts at: 2137 3230 4960 2137 Size: 1093 1730 2518 Fragments arranged by size: 2518 1730 1093 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2386 2696 844 Size: 1542 310 3489 Fragments arranged by size: 3489 1542 310 BsrBI CCG'CTC Cuts at: 1394 1823 3228 1394 Size: 429 1405 3507 Fragments arranged by size: 3507 1405 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2619 3836 4010 65 Size: 1183 1371 1217 174 1396 Fragments arranged by size: 1396 1371 1217 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3985 4172 1700 Size: 110 2175 187 2869 Fragments arranged by size: 2869 2175 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5341 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5341 BssSI C'ACGA_G Cuts at: 3401 4413 3401 Size: 1012 4329 BstAPI GCAn_nnn'nTGC Cuts at: 794 2216 794 Size: 1422 3919 BstBI TT'CG_AA Cuts at: 4145 4145 Size: 5341 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5341 BstXI CCAn_nnnn'nTGG Cuts at: 2099 2297 2099 Size: 198 5143 BstYI r'GATC_y Cuts at: 1972 2068 2614 2671 3038 3423 3440 4892 4978 Size: 96 546 57 367 385 17 1452 86 Cuts at: 4978 4990 5336 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 546 385 367 346 96 86 57 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3850 Fragments arranged by size: 3850 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4602 Fragments arranged by size: 4602 683 56 BtsI GCAGTG_nn' Cuts at: 2558 2857 3651 3671 2558 Size: 299 794 20 4228 Fragments arranged by size: 4228 794 299 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5341 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5306 DraI TTT'AAA Cuts at: 2645 2645 Size: 5341 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2015 4348 809 Size: 507 699 2333 1802 Fragments arranged by size: 2333 1802 699 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2788 3677 5306 Size: 54 1425 50 275 18 958 889 1629 Cuts at: 5306 8 Size: 43 Fragments arranged by size: 1629 1425 958 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2788 1537 Size: 275 976 4090 Fragments arranged by size: 4090 976 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2451 2591 3271 1353 Size: 1098 140 680 3423 Fragments arranged by size: 3423 1098 680 140 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2061 3928 4302 4448 387 Size: 1064 138 472 1867 374 146 1280 Fragments arranged by size: 1867 1280 1064 472 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2193 2319 2332 2432 3404 4001 4788 Size: 393 561 126 13 100 972 597 787 Cuts at: 4788 5056 1239 Size: 268 1524 Fragments arranged by size: 1524 972 787 597 561 393 268 126 100 13 EcoRI G'AATT_C Cuts at: 2650 3028 2650 Size: 378 4963 FspI TGC'GCA Cuts at: 3847 3847 Size: 5341 HaeII r_GCGC'y Cuts at: 1678 4488 1678 Size: 2810 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3982 4014 4056 4088 1373 Size: 32 135 32 2410 32 42 32 2626 Fragments arranged by size: 2626 2410 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2685 2931 669 Size: 988 281 747 246 3079 Fragments arranged by size: 3079 988 747 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5341 HpaI GTT'AAC Cuts at: 2931 2931 Size: 5341 KpnI G_GTAC'C Cuts at: 2666 2666 Size: 5341 MfeI C'AATT_G Cuts at: 2940 2940 Size: 5341 MluI A'CGCG_T Cuts at: 5217 5217 Size: 5341 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2310 4455 4639 1305 Size: 1005 2145 184 2007 Fragments arranged by size: 2145 2007 1005 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3519 Fragments arranged by size: 3519 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3299 3658 3817 518 Size: 648 2133 359 159 2042 Fragments arranged by size: 2133 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2297 2757 3434 4582 4827 1606 Size: 691 460 677 1148 245 2120 Fragments arranged by size: 2120 1148 691 677 460 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3850 Fragments arranged by size: 3850 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5341 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5341 NotI GC'GGCC_GC Cuts at: 2788 2788 Size: 5341 NspI r_CATG'y Cuts at: 1132 1229 2699 4244 1132 Size: 97 1470 1545 2229 Fragments arranged by size: 2229 1545 1470 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5341 PciI A'CATG_T Cuts at: 4240 4240 Size: 5341 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5341 PmeI GTTT'AAAC Cuts at: 2645 2645 Size: 5341 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3410 3442 4923 4955 3410 Size: 32 1481 32 3796 Fragments arranged by size: 3796 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5341 PsiI TTA'TAA Cuts at: 2911 2911 Size: 5341 PstI C_TGCA'G Cuts at: 830 2568 2693 830 Size: 1738 125 3478 Fragments arranged by size: 3478 1738 125 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5341 PvuII CAG'CTG Cuts at: 2297 2297 Size: 5341 SalI G'TCGA_C Cuts at: 1936 2683 1936 Size: 747 4594 SbfI CC_TGCA'GG Cuts at: 2693 2693 Size: 5341 ScaI AGT'ACT Cuts at: 2117 3589 5301 2117 Size: 1472 1712 2157 Fragments arranged by size: 2157 1712 1472 SfcI C'TryA_G Cuts at: 826 1045 2564 2689 3824 4505 4696 826 Size: 219 1519 125 1135 681 191 1471 Fragments arranged by size: 1519 1471 1135 681 219 191 125 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5341 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5341 SmaI CCC'GGG Cuts at: 1872 2668 1872 Size: 796 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2020 3445 4346 4608 820 Size: 197 926 77 1425 901 262 1553 Fragments arranged by size: 1553 1425 926 901 262 197 77 SnaBI TAC'GTA Cuts at: 493 3132 493 Size: 2639 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5341 SphI G_CATG'C Cuts at: 1132 2699 1132 Size: 1567 3774 SspI AAT'ATT Cuts at: 5 52 3265 5 Size: 47 3213 2081 Fragments arranged by size: 3213 2081 47 StuI AGG'CCT Cuts at: 1517 2522 1517 Size: 1005 4336 StyI C'CwwG_G Cuts at: 513 1065 2004 2780 513 Size: 552 939 776 3074 Fragments arranged by size: 3074 939 776 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2195 3368 3385 3538 3723 4168 325 Size: 1255 615 1173 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1173 615 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2115 3587 5299 Size: 274 80 33 51 1443 138 1472 1712 Cuts at: 5299 96 Size: 138 Fragments arranged by size: 1712 1472 1443 274 138 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2226 2258 5301 5333 2226 Size: 32 3043 32 2234 Fragments arranged by size: 3043 2234 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5341 XbaI T'CTAG_A Cuts at: 2677 2677 Size: 5341 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5341 XmaI C'CCGG_G Cuts at: 1870 2666 1870 Size: 796 4545 XmnI GAAnn'nnTTC Cuts at: 3470 3470 Size: 5341 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3149 276 Size: 53 83 186 936 1615 2468 Fragments arranged by size: 2468 1615 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI