FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2403, 212 aa
  1>>>pF1KE2403 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4658+/-0.000845; mu= 11.7026+/- 0.051
 mean_var=52.4868+/-10.461, 0's: 0 Z-trim(105.2): 35  B-trim: 293 in 1/48
 Lambda= 0.177031
 statistics sampled from 8264 (8273) to 8264 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS10240.1 SENP8 gene_id:123228|Hs108|chr15       ( 212) 1423 371.2 2.6e-103


>>CCDS10240.1 SENP8 gene_id:123228|Hs108|chr15            (212 aa)
 initn: 1423 init1: 1423 opt: 1423  Z-score: 1968.3  bits: 371.2 E(32554): 2.6e-103
Smith-Waterman score: 1423; 99.5% identity (100.0% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE2 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDPVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSDHVSFISPEVTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FIKCTSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HSRSNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFR
              130       140       150       160       170       180

              190       200       210  
pF1KE2 QQTESLLQLLTPAYITKKRGEWKDLIATLAKK
       ::::::::::::::::::::::::::.:::::
CCDS10 QQTESLLQLLTPAYITKKRGEWKDLITTLAKK
              190       200       210  




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:19:25 2016 done: Sun Nov  6 09:19:26 2016
 Total Scan time:  2.000 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]