Result of FASTA (omim) for
pFN21AB4538
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4538, 397 aa
1>>>pF1KB4538 397 - 397 aa - 397 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0679+/-0.000393; mu= 17.9382+/- 0.025
mean_var=67.0824+/-13.635, 0's: 0 Z-trim(111.9): 73 B-trim: 47 in 1/50
Lambda= 0.156592
statistics sampled from 20537 (20610) to 20537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.242), width: 16
Scan time: 8.230
The best scores are: opt bits E(85289)
NP_001306004 (OMIM: 605581) N-acetyllactosaminide ( 397) 2707 620.8 1.8e-177
NP_006568 (OMIM: 605581) N-acetyllactosaminide bet ( 397) 2707 620.8 1.8e-177
XP_005247010 (OMIM: 615313) PREDICTED: UDP-GlcNAc: ( 328) 877 207.3 4.3e-53
NP_660279 (OMIM: 615313) UDP-GlcNAc:betaGal beta-1 ( 401) 877 207.4 5.1e-53
NP_001317421 (OMIM: 605864) N-acetyllactosaminide ( 353) 853 201.9 2e-51
NP_110392 (OMIM: 605864) N-acetyllactosaminide bet ( 378) 853 201.9 2.1e-51
NP_619651 (OMIM: 615315) acetylgalactosaminyl-O-gl ( 384) 832 197.2 5.7e-50
NP_055071 (OMIM: 605863) N-acetyllactosaminide bet ( 372) 799 189.7 9.7e-48
XP_011525928 (OMIM: 605863) PREDICTED: N-acetyllac ( 372) 799 189.7 9.7e-48
NP_940942 (OMIM: 615357) UDP-GlcNAc:betaGal beta-1 ( 397) 728 173.7 6.9e-43
XP_011525236 (OMIM: 615357) PREDICTED: UDP-GlcNAc: ( 397) 728 173.7 6.9e-43
XP_006712882 (OMIM: 603093) PREDICTED: beta-1,3-ga ( 326) 643 154.4 3.5e-37
NP_066191 (OMIM: 603093) beta-1,3-galactosyltransf ( 326) 643 154.4 3.5e-37
XP_011510387 (OMIM: 603093) PREDICTED: beta-1,3-ga ( 326) 643 154.4 3.5e-37
XP_005246988 (OMIM: 603093) PREDICTED: beta-1,3-ga ( 326) 643 154.4 3.5e-37
NP_003774 (OMIM: 603018) beta-1,3-galactosyltransf ( 422) 580 140.3 8.4e-33
XP_011511527 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_011511531 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_005247882 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_011511528 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_011511529 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_011511530 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_005247881 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_005247880 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
XP_016862798 (OMIM: 615333) PREDICTED: lactosylcer ( 378) 557 135.1 2.8e-31
NP_114436 (OMIM: 615333) lactosylceramide 1,3-N-ac ( 378) 557 135.1 2.8e-31
XP_016883729 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883718 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883723 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883730 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883721 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883722 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883716 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883727 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883724 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
NP_149360 (OMIM: 604066) beta-1,3-galactosyltransf ( 310) 483 118.3 2.6e-26
NP_006048 (OMIM: 604066) beta-1,3-galactosyltransf ( 310) 483 118.3 2.6e-26
XP_016883720 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
NP_001265579 (OMIM: 604066) beta-1,3-galactosyltra ( 310) 483 118.3 2.6e-26
XP_016883728 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883726 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883717 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
NP_149361 (OMIM: 604066) beta-1,3-galactosyltransf ( 310) 483 118.3 2.6e-26
XP_016883725 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
XP_016883719 (OMIM: 604066) PREDICTED: beta-1,3-ga ( 310) 483 118.3 2.6e-26
NP_149362 (OMIM: 604066) beta-1,3-galactosyltransf ( 314) 483 118.3 2.6e-26
XP_005247918 (OMIM: 111400,603094,615021) PREDICTE ( 331) 438 108.1 3.1e-23
NP_149357 (OMIM: 111400,603094,615021) UDP-GalNAc: ( 331) 438 108.1 3.1e-23
XP_006713866 (OMIM: 111400,603094,615021) PREDICTE ( 331) 438 108.1 3.1e-23
NP_001033717 (OMIM: 111400,603094,615021) UDP-GalN ( 331) 438 108.1 3.1e-23
>>NP_001306004 (OMIM: 605581) N-acetyllactosaminide beta (397 aa)
initn: 2707 init1: 2707 opt: 2707 Z-score: 3307.2 bits: 620.8 E(85289): 1.8e-177
Smith-Waterman score: 2707; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397)
10 20 30 40 50 60
pF1KB4 MSVGRRRIKLLGILMMANVFIYFIMEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVGRRRIKLLGILMMANVFIYFIMEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 REQEKLNRQYNPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REQEKLNRQYNPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LYLRCRNYSLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYLRCRNYSLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 LLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 VFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 PPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEE
310 320 330 340 350 360
370 380 390
pF1KB4 KNKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
:::::::::::::::::::::::::::::::::::::
NP_001 KNKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
370 380 390
>>NP_006568 (OMIM: 605581) N-acetyllactosaminide beta-1, (397 aa)
initn: 2707 init1: 2707 opt: 2707 Z-score: 3307.2 bits: 620.8 E(85289): 1.8e-177
Smith-Waterman score: 2707; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397)
10 20 30 40 50 60
pF1KB4 MSVGRRRIKLLGILMMANVFIYFIMEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSVGRRRIKLLGILMMANVFIYFIMEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 REQEKLNRQYNPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 REQEKLNRQYNPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LYLRCRNYSLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LYLRCRNYSLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 LLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 VFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 PPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEE
310 320 330 340 350 360
370 380 390
pF1KB4 KNKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
:::::::::::::::::::::::::::::::::::::
NP_006 KNKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
370 380 390
>>XP_005247010 (OMIM: 615313) PREDICTED: UDP-GlcNAc:beta (328 aa)
initn: 669 init1: 294 opt: 877 Z-score: 1074.1 bits: 207.3 E(85289): 4.3e-53
Smith-Waterman score: 877; 43.3% identity (73.5% similar) in 298 aa overlap (109-397:28-321)
80 90 100 110 120 130
pF1KB4 NQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFLLYLRCRNYSLLIDQPDKC
:. : .:..::.: .:: . .:...:.::
XP_005 MASQGPQAWDVTTTNCSANINLTHQPWFQVLEPQFRQFLFYRHCRYFPMLLNHPEKC
10 20 30 40 50
140 150 160 170 180 190
pF1KB4 AKKPFLLLAIKSLTPHFARRQAIRESWGQE--SNAGNQTVVR-VFLLGQTPPEDNHPDLS
.::...::. . ::.:::..::.: : .:.. .:: .:::: . .... .
XP_005 RGDVYLLVVVKSVITQHDRREAIRQTWGRERQSAGGGRGAVRTLFLLGTASKQEERTHYQ
60 70 80 90 100 110
200 210 220 230 240 250
pF1KB4 DMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHI
..: .:.. . :::.:.. ::::::.:::. ::.:.. :: . :.:::::::::: ..
XP_005 QLLAYEDRLYGDILQWGFLDTFFNLTLKEIHFLKWLDIYCPHVPFIFKGDDDVFVNPTNL
120 130 140 150 160 170
260 270 280 290 300 310
pF1KB4 LNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYS-GLYPPYAGGGGFLYSGH
:..: . . ..::.:::...: : : : ::::: ..:. . :::::::::::..:
XP_005 LEFLAD--RQPQENLFVGDVLQHARPIRRKDNKYYIPGALYGKASYPPYAGGGGFLMAGS
180 190 200 210 220 230
320 330 340 350 360
pF1KB4 LALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKNN-----ICSY
:: ::.: : ..:::::::. ::::. ::. : :.::.:: : .:.:. : .
XP_005 LARRLHHACDTLELYPIDDVFLGMCLEVLGVQPTAHEGFKTFGIS-RNRNSRMNKEPCFF
240 250 260 270 280 290
370 380 390
pF1KB4 VDLMLVHSRKPQEMIDIWSQLQSAHLKC
...::. : :.. .:. ..: .: :
XP_005 RAMLVVHKLLPPELLAMWGLVHS-NLTCSRKLQVL
300 310 320
>>NP_660279 (OMIM: 615313) UDP-GlcNAc:betaGal beta-1,3-N (401 aa)
initn: 669 init1: 294 opt: 877 Z-score: 1072.9 bits: 207.4 E(85289): 5.1e-53
Smith-Waterman score: 878; 37.8% identity (67.9% similar) in 368 aa overlap (47-397:33-394)
20 30 40 50 60 70
pF1KB4 ANVFIYFIMEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWNREQEKLNRQYNPI---
.: . :: .. :. .. ::
NP_660 LWKKTVYRSLCLALALLVAVTVFQRSLTPGQFLQEPPPPTLEPQKAQKPNGQLVNPNNFW
10 20 30 40 50 60
80 90 100 110 120
pF1KB4 -----LSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFLLYLRCRNY
.. : ..... . ... : : .. .: :. : .:..::.: .:: .
NP_660 KNPKDVAAPTPMASQGPQAWDVTTTN-CSANINLTHQ-PWFQVLEPQFRQFLFYRHCRYF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQE--SNAGNQTVVR-VFLLGQT
.:...:.:: .::...::. . ::.:::..::.: : .:.. .:: .:::: .
NP_660 PMLLNHPEKCRGDVYLLVVVKSVITQHDRREAIRQTWGRERQSAGGGRGAVRTLFLLGTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 PPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGD
.... ...: .:.. . :::.:.. ::::::.:::. ::.:.. :: . :.::::
NP_660 SKQEERTHYQQLLAYEDRLYGDILQWGFLDTFFNLTLKEIHFLKWLDIYCPHVPFIFKGD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 DDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYS-GLYPPYA
:::::: ..:..: .. ..::.:::...: : : : ::::: ..:. . :::::
NP_660 DDVFVNPTNLLEFLA--DRQPQENLFVGDVLQHARPIRRKDNKYYIPGALYGKASYPPYA
250 260 270 280 290
310 320 330 340 350 360
pF1KB4 GGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKN
::::::..: :: ::.: : ..:::::::. ::::. ::. : :.::.:: : .:.:
NP_660 GGGGFLMAGSLARRLHHACDTLELYPIDDVFLGMCLEVLGVQPTAHEGFKTFGIS-RNRN
300 310 320 330 340 350
370 380 390
pF1KB4 N-----ICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
. : . ...::. : :.. .:. ..: .: :
NP_660 SRMNKEPCFFRAMLVVHKLLPPELLAMWGLVHS-NLTCSRKLQVL
360 370 380 390 400
>>NP_001317421 (OMIM: 605864) N-acetyllactosaminide beta (353 aa)
initn: 759 init1: 244 opt: 853 Z-score: 1044.3 bits: 201.9 E(85289): 2e-51
Smith-Waterman score: 853; 43.5% identity (72.1% similar) in 308 aa overlap (96-397:51-345)
70 80 90 100 110 120
pF1KB4 LNRQYNPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFLLYLRC
: :. :.:. .::.: . :: : .:
NP_001 LLFLRKAAKPAGDPTAHQPFWAPPTPRHSRCPPNHTVSSASL---SLPSRHRLFLTYRHC
30 40 50 60 70
130 140 150 160 170 180
pF1KB4 RNYSLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESN-AGNQTVVRVFLLG-
::.:.:.. :. :.: :::::::: : :: ::: .::. .. : .. . :::::
NP_001 RNFSILLE-PSGCSKDTFLLLAIKSQPGHVERRAAIRSTWGRVGGWARGRQLKLVFLLGV
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB4 --QTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFV
..:: ...: .::.. .:::.:.. . ::::.:::. . ::: ..::...:.
NP_001 AGSAPP-------AQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFM
140 150 160 170 180
250 260 270 280 290 300
pF1KB4 FKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGL-Y
.::::::::.. ..:..:.. . :.::..::::..: :.:. :.::.:: .: . :
NP_001 LKGDDDVFVHVPNVLEFLDGWDP--AQDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHY
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB4 PPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEE
::::::::...: . :: : ....:.:::::..::::..::: : .: ::.:: :..
NP_001 PPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMHHAGFKTFGIRR
250 260 270 280 290 300
370 380 390
pF1KB4 K-NKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
. . : : :.::: .: :: .:. . . :::
NP_001 PLDPLDPCLYRGLLLVHRLSPLEMWTMWALVTDEGLKCAAGPIPQR
310 320 330 340 350
>>NP_110392 (OMIM: 605864) N-acetyllactosaminide beta-1, (378 aa)
initn: 759 init1: 244 opt: 853 Z-score: 1043.9 bits: 201.9 E(85289): 2.1e-51
Smith-Waterman score: 853; 43.5% identity (72.1% similar) in 308 aa overlap (96-397:76-370)
70 80 90 100 110 120
pF1KB4 LNRQYNPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFLLYLRC
: :. :.:. .::.: . :: : .:
NP_110 LLFLRKAAKPAGDPTAHQPFWAPPTPRHSRCPPNHTVSSASL---SLPSRHRLFLTYRHC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 RNYSLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESN-AGNQTVVRVFLLG-
::.:.:.. :. :.: :::::::: : :: ::: .::. .. : .. . :::::
NP_110 RNFSILLE-PSGCSKDTFLLLAIKSQPGHVERRAAIRSTWGRVGGWARGRQLKLVFLLGV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 --QTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFV
..:: ...: .::.. .:::.:.. . ::::.:::. . ::: ..::...:.
NP_110 AGSAPP-------AQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFM
170 180 190 200 210
250 260 270 280 290 300
pF1KB4 FKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGL-Y
.::::::::.. ..:..:.. . :.::..::::..: :.:. :.::.:: .: . :
NP_110 LKGDDDVFVHVPNVLEFLDGWDP--AQDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHY
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB4 PPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEE
::::::::...: . :: : ....:.:::::..::::..::: : .: ::.:: :..
NP_110 PPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPMHHAGFKTFGIRR
280 290 300 310 320 330
370 380 390
pF1KB4 K-NKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
. . : : :.::: .: :: .:. . . :::
NP_110 PLDPLDPCLYRGLLLVHRLSPLEMWTMWALVTDEGLKCAAGPIPQR
340 350 360 370
>>NP_619651 (OMIM: 615315) acetylgalactosaminyl-O-glycos (384 aa)
initn: 756 init1: 227 opt: 832 Z-score: 1018.2 bits: 197.2 E(85289): 5.7e-50
Smith-Waterman score: 832; 41.3% identity (70.8% similar) in 298 aa overlap (109-397:82-377)
80 90 100 110 120 130
pF1KB4 NQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFLLYLRCRNYSLLIDQPDKC
:..:: :..::: : .::.. :: : : ::
NP_619 TDAPAADEPPSELVPGPPCVANASANATADFEQLPARIQDFLRYRHCRHFPLLWDAPAKC
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB4 A--KKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVFLLGQTPPEDNH--PDL
: . :::::.:: :. ::. ::..:::: . :.. : :.:::: :::. :
NP_619 AGGRGVFLLLAVKSAPEHYERRELIRRTWGQERSYGGRPVRRLFLLGTPGPEDEARAERL
120 130 140 150 160 170
200 210 220 230 240 250
pF1KB4 SDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHH
.... .:...: :.:.: . :::.::.::.. .: :... :: ..:...:::::::.: .
NP_619 AELVALEAREHGDVLQWAFADTFLNLTLKHLHLLDWLAARCPHARFLLSGDDDVFVHTAN
180 190 200 210 220 230
260 270 280 290 300 310
pF1KB4 ILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSG-LYPPYAGGGGFLYSG
.. .:.. . .. :: :...... : ::. ::..: .. : :: : .::::: ::
NP_619 VVRFLQA--QPPGRHLFSGQLMEGSVPIRDSWSKYFVPPQLFPGSAYPVYCSGGGFLLSG
240 250 260 270 280
320 330 340 350 360
pF1KB4 HLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIE----EKNKNNICSY
: : . .. :.::::.: ::::.. ::.: :.:.: : .. .... . : :
NP_619 PTARALRAAARHTPLFPIDDAYMGMCLERAGLAPSGHEGIRPFGVQLPGAQQSSFDPCMY
290 300 310 320 330 340
370 380 390
pF1KB4 VDLMLVHSRKPQEMIDIWSQLQSAHLKC
.:.::: : ::. .:. :.: :.:
NP_619 RELLLVHRFAPYEMLLMWKALHSPALSCDRGHRVS
350 360 370 380
>>NP_055071 (OMIM: 605863) N-acetyllactosaminide beta-1, (372 aa)
initn: 739 init1: 372 opt: 799 Z-score: 978.1 bits: 189.7 E(85289): 9.7e-48
Smith-Waterman score: 799; 41.3% identity (70.0% similar) in 303 aa overlap (103-397:65-365)
80 90 100 110 120 130
pF1KB4 ILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVT--GFNNLPDRFKDFLLYLRCRNYSL
::.:: : . :.. ..:::: .::.. :
NP_055 KVQEQPPAIPEALAWPTPPTRPAPAPCHANTSMVTHPDFATQPQHVQNFLLYRHCRHFPL
40 50 60 70 80 90
140 150 160 170 180
pF1KB4 LID-QPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVFLLGQTPPED
: : :.:::. ::::.::: ...::. .:..::.: .. . . .::.: .
NP_055 LQDVPPSKCAQPVFLLLVIKSSPSNYVRRELLRRTWGRERKVRGLQLRLLFLVGTASNPH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB4 NHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVF
. .. .:..:.. : :::.:...:.::::.::.::::.: : : .. ::..::::::
NP_055 EARKVNRLLELEAQTHGDILQWDFHDSFFNLTLKQVLFLQWQETRCANASFVLNGDDDVF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB4 VNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGL-YPPYAGGGG
..: ... ::. .. .. ::.:..:.:.:: : :::.:::: .. :::: ::::
NP_055 AHTDNMVFYLQ--DHDPGRHLFVGQLIQNVGPIRAFWSKYYVPEVVTQNERYPPYCGGGG
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB4 FLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKN----
:: : : : . . . ..:::::. ::::. :: : .:.:.:: .. ..
NP_055 FLLSRFTAAALRRAAHVLDIFPIDDVFLGMCLELEGLKPASHSGIRTSGVRAPSQRLSSF
280 290 300 310 320 330
370 380 390
pF1KB4 NICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
. : : ::.::: : ::. .:. :.. .: :
NP_055 DPCFYRDLLLVHRFLPYEMLLMWDALNQPNLTCGNQTQIY
340 350 360 370
>>XP_011525928 (OMIM: 605863) PREDICTED: N-acetyllactosa (372 aa)
initn: 739 init1: 372 opt: 799 Z-score: 978.1 bits: 189.7 E(85289): 9.7e-48
Smith-Waterman score: 799; 41.3% identity (70.0% similar) in 303 aa overlap (103-397:65-365)
80 90 100 110 120 130
pF1KB4 ILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVT--GFNNLPDRFKDFLLYLRCRNYSL
::.:: : . :.. ..:::: .::.. :
XP_011 KVQEQPPAIPEALAWPTPPTRPAPAPCHANTSMVTHPDFATQPQHVQNFLLYRHCRHFPL
40 50 60 70 80 90
140 150 160 170 180
pF1KB4 LID-QPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVFLLGQTPPED
: : :.:::. ::::.::: ...::. .:..::.: .. . . .::.: .
XP_011 LQDVPPSKCAQPVFLLLVIKSSPSNYVRRELLRRTWGRERKVRGLQLRLLFLVGTASNPH
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB4 NHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVF
. .. .:..:.. : :::.:...:.::::.::.::::.: : : .. ::..::::::
XP_011 EARKVNRLLELEAQTHGDILQWDFHDSFFNLTLKQVLFLQWQETRCANASFVLNGDDDVF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB4 VNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGL-YPPYAGGGG
..: ... ::. .. .. ::.:..:.:.:: : :::.:::: .. :::: ::::
XP_011 AHTDNMVFYLQ--DHDPGRHLFVGQLIQNVGPIRAFWSKYYVPEVVTQNERYPPYCGGGG
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB4 FLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKN----
:: : : : . . . ..:::::. ::::. :: : .:.:.:: .. ..
XP_011 FLLSRFTAAALRRAAHVLDIFPIDDVFLGMCLELEGLKPASHSGIRTSGVRAPSQRLSSF
280 290 300 310 320 330
370 380 390
pF1KB4 NICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC
. : : ::.::: : ::. .:. :.. .: :
XP_011 DPCFYRDLLLVHRFLPYEMLLMWDALNQPNLTCGNQTQIY
340 350 360 370
>>NP_940942 (OMIM: 615357) UDP-GlcNAc:betaGal beta-1,3-N (397 aa)
initn: 719 init1: 495 opt: 728 Z-score: 891.0 bits: 173.7 E(85289): 6.9e-43
Smith-Waterman score: 746; 34.5% identity (65.8% similar) in 351 aa overlap (55-397:69-397)
30 40 50 60 70 80
pF1KB4 MEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWNREQEKLNRQYNPILSMLTNQTGEA
: ::::..: .:. :. .... :.
NP_940 RGTPPSPTPANPEPTLPANLSTRLGQTIPLPFAYWNQQQWRLG-------SLPSGDSTET
40 50 60 70 80 90
90 100 110 120 130
pF1KB4 GRLSNISHLNYCEP-DLRVTSVVTGFNNLPDRFKDFLLYLRCRNYSLLI-----DQPDKC
: :. ... . : . : .. ::: ::.. . .: ..:
NP_940 GG---------CQAWGAAAATEIPDFASYPKDLRRFLLSAACRSFPQWLPGGGGSQVSSC
100 110 120 130 140
140 150 160 170 180 190
pF1KB4 AKK--PFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVFLLGQTPPEDNHPDLSD
. :.::::.:: .::.:::.::.::. . . . .:::: .: . :::..
NP_940 SDTDVPYLLLAVKSEPGRFAERQAVRETWGSPAPG----IRLLFLLG-SPVGEAGPDLDS
150 160 170 180 190
200 210 220 230 240 250
pF1KB4 MLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHIL
.. .::....:.:.:.. :. :: .::..:.: :.. :: . ::....::.::.: .:
NP_940 LVAWESRRYSDLLLWDFLDVPFNQTLKDLLLLAWLGRHCPTVSFVLRAQDDAFVHTPALL
200 210 220 230 240 250
260 270 280 290 300 310
pF1KB4 NYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLYPPYAGGGGFLYSGHLA
.: .: ..:..:..:.:. .: : : .:.:: . : :: ::.:::.. .:.::
NP_940 AHLRALPPASARSLYLGEVFTQAMPLRKPGGPFYVPESFFEGGYPAYASGGGYVIAGRLA
260 270 280 290 300 310
320 330 340 350 360 370
pF1KB4 LRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKNNICSYVDLMLVH
: . . .: .:..:::::.:.. :::::. : :: : ... .. :.. .:.::.
NP_940 PWLLRAAARVAPFPFEDVYTGLCIRALGLVPQAHPGFLTAWPADRTADH-CAFRNLLLVR
320 330 340 350 360 370
380 390
pF1KB4 SRKPQEMIDIWSQLQSAHLKC
:: : .:.:::. .:.:
NP_940 PLGPQASIRLWKQLQDPRLQC
380 390
397 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:54:12 2016 done: Sat Nov 5 05:54:13 2016
Total Scan time: 8.230 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]