FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1517, 113 aa 1>>>pF1KE1517 113 - 113 aa - 113 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0629+/-0.000372; mu= 10.4192+/- 0.023 mean_var=50.0136+/- 9.800, 0's: 0 Z-trim(112.1): 15 B-trim: 90 in 1/50 Lambda= 0.181355 statistics sampled from 20879 (20891) to 20879 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.245), width: 16 Scan time: 4.260 The best scores are: opt bits E(85289) NP_006510 (OMIM: 601554) dynein light chain Tctex- ( 113) 746 202.7 1e-52 NP_001278531 (OMIM: 601554) dynein light chain Tct ( 99) 614 168.1 2.3e-42 NP_006511 (OMIM: 300302) dynein light chain Tctex- ( 116) 479 132.8 1.1e-31 NP_001278532 (OMIM: 601554) dynein light chain Tct ( 82) 402 112.7 9.7e-26 NP_001013654 (OMIM: 611713) tctex1 domain-containi ( 221) 146 45.8 3.5e-05 XP_011539678 (OMIM: 611713) PREDICTED: tctex1 doma ( 221) 146 45.8 3.5e-05 XP_011539677 (OMIM: 611713) PREDICTED: tctex1 doma ( 221) 146 45.8 3.5e-05 XP_016856676 (OMIM: 611713) PREDICTED: tctex1 doma ( 262) 146 45.8 4.1e-05 XP_006710677 (OMIM: 611713) PREDICTED: tctex1 doma ( 279) 146 45.8 4.3e-05 >>NP_006510 (OMIM: 601554) dynein light chain Tctex-type (113 aa) initn: 746 init1: 746 opt: 746 Z-score: 1067.3 bits: 202.7 E(85289): 1e-52 Smith-Waterman score: 746; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113) 10 20 30 40 50 60 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 70 80 90 100 110 >>NP_001278531 (OMIM: 601554) dynein light chain Tctex-t (99 aa) initn: 614 init1: 614 opt: 614 Z-score: 881.5 bits: 168.1 E(85289): 2.3e-42 Smith-Waterman score: 627; 87.6% identity (87.6% similar) in 113 aa overlap (1-113:1-99) 10 20 30 40 50 60 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP ::::::::: ::::::::::::::::::::::::::::::::::::: NP_001 MEDYQAAEE--------------AIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 10 20 30 40 70 80 90 100 110 pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 50 60 70 80 90 >>NP_006511 (OMIM: 300302) dynein light chain Tctex-type (116 aa) initn: 473 init1: 450 opt: 479 Z-score: 689.5 bits: 132.8 E(85289): 1.1e-31 Smith-Waterman score: 479; 54.4% identity (91.2% similar) in 114 aa overlap (1-113:1-114) 10 20 30 40 50 pF1KE1 MEDYQA-AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGK ::.:. .:..: ..:. ::::: .....::. :.:...::::...:::.:..:.:::: NP_006 MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 PFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI .::::::...::.. :.:::::::::...::.:::::::.:: :::..:...: NP_006 AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL 70 80 90 100 110 >>NP_001278532 (OMIM: 601554) dynein light chain Tctex-t (82 aa) initn: 402 init1: 402 opt: 402 Z-score: 583.1 bits: 112.7 E(85289): 9.7e-26 Smith-Waterman score: 402; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64) 10 20 30 40 50 60 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI :::: NP_001 FKYIEEWSWITHSKFLLLGQLY 70 80 >>NP_001013654 (OMIM: 611713) tctex1 domain-containing p (221 aa) initn: 120 init1: 120 opt: 146 Z-score: 214.0 bits: 45.8 E(85289): 3.5e-05 Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:127-218) 10 20 30 40 50 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT .. :. ... :. ... . . .. ::. NP_001 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV 100 110 120 130 140 150 60 70 80 90 100 pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF .: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... .... NP_001 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH 160 170 180 190 200 210 110 pF1KE1 GLSI :: NP_001 GLYCE 220 >>XP_011539678 (OMIM: 611713) PREDICTED: tctex1 domain-c (221 aa) initn: 120 init1: 120 opt: 146 Z-score: 214.0 bits: 45.8 E(85289): 3.5e-05 Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:127-218) 10 20 30 40 50 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT .. :. ... :. ... . . .. ::. XP_011 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV 100 110 120 130 140 150 60 70 80 90 100 pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF .: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... .... XP_011 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH 160 170 180 190 200 210 110 pF1KE1 GLSI :: XP_011 GLYCE 220 >>XP_011539677 (OMIM: 611713) PREDICTED: tctex1 domain-c (221 aa) initn: 120 init1: 120 opt: 146 Z-score: 214.0 bits: 45.8 E(85289): 3.5e-05 Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:127-218) 10 20 30 40 50 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT .. :. ... :. ... . . .. ::. XP_011 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV 100 110 120 130 140 150 60 70 80 90 100 pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF .: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... .... XP_011 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH 160 170 180 190 200 210 110 pF1KE1 GLSI :: XP_011 GLYCE 220 >>XP_016856676 (OMIM: 611713) PREDICTED: tctex1 domain-c (262 aa) initn: 120 init1: 120 opt: 146 Z-score: 212.8 bits: 45.8 E(85289): 4.1e-05 Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:168-259) 10 20 30 40 50 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT .. :. ... :. ... . . .. ::. XP_016 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV 140 150 160 170 180 190 60 70 80 90 100 pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF .: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... .... XP_016 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH 200 210 220 230 240 250 110 pF1KE1 GLSI :: XP_016 GLYCE 260 >>XP_006710677 (OMIM: 611713) PREDICTED: tctex1 domain-c (279 aa) initn: 120 init1: 120 opt: 146 Z-score: 212.4 bits: 45.8 E(85289): 4.3e-05 Smith-Waterman score: 146; 22.8% identity (63.0% similar) in 92 aa overlap (21-111:185-276) 10 20 30 40 50 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQT .. :. ... :. ... . . .. ::. XP_006 PLAPARWVAPSYRTEPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQV 160 170 180 190 200 210 60 70 80 90 100 pF1KE1 LSQLTKLGKP-FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAF .: .:. : .: . . :. . : :.:..: .:: . :: .: . : ... .... XP_006 HVRLRELSPPRYKLVCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVH 220 230 240 250 260 270 110 pF1KE1 GLSI :: XP_006 GLYCE 113 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:31:47 2016 done: Sun Nov 6 22:31:48 2016 Total Scan time: 4.260 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]