FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1517, 113 aa 1>>>pF1KE1517 113 - 113 aa - 113 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1056+/-0.000792; mu= 10.3418+/- 0.047 mean_var=50.9699+/-10.101, 0's: 0 Z-trim(105.2): 12 B-trim: 0 in 0/50 Lambda= 0.179646 statistics sampled from 8313 (8319) to 8313 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.256), width: 16 Scan time: 1.300 The best scores are: opt bits E(32554) CCDS5257.1 DYNLT1 gene_id:6993|Hs108|chr6 ( 113) 746 200.8 1.4e-52 CCDS14243.1 DYNLT3 gene_id:6990|Hs108|chrX ( 116) 479 131.7 1e-31 >>CCDS5257.1 DYNLT1 gene_id:6993|Hs108|chr6 (113 aa) initn: 746 init1: 746 opt: 746 Z-score: 1057.3 bits: 200.8 E(32554): 1.4e-52 Smith-Waterman score: 746; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113) 10 20 30 40 50 60 pF1KE1 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 MEDYQAAEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKP 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 FKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI 70 80 90 100 110 >>CCDS14243.1 DYNLT3 gene_id:6990|Hs108|chrX (116 aa) initn: 473 init1: 450 opt: 479 Z-score: 683.1 bits: 131.7 E(32554): 1e-31 Smith-Waterman score: 479; 54.4% identity (91.2% similar) in 114 aa overlap (1-113:1-114) 10 20 30 40 50 pF1KE1 MEDYQA-AEETAFVVDEVSNIVKEAIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGK ::.:. .:..: ..:. ::::: .....::. :.:...::::...:::.:..:.:::: CCDS14 MEEYHRHCDEVGFNAEEAHNIVKECVDGVLGGEDYNHNNINQWTASIVEQSLTHLVKLGK 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 PFKYIVTCVIMQKNGAGLHTASSCFWDSSTDGSCTVRWENKTMYCIVSAFGLSI .::::::...::.. :.:::::::::...::.:::::::.:: :::..:...: CCDS14 AYKYIVTCAVVQKSAYGFHTASSCFWDTTSDGTCTVRWENRTMNCIVNVFAIAIVL 70 80 90 100 110 113 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:31:47 2016 done: Sun Nov 6 22:31:47 2016 Total Scan time: 1.300 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]