FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6214, 271 aa 1>>>pF1KE6214 271 - 271 aa - 271 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6992+/-0.000725; mu= 14.0434+/- 0.044 mean_var=82.3803+/-16.233, 0's: 0 Z-trim(111.1): 20 B-trim: 0 in 0/53 Lambda= 0.141307 statistics sampled from 12116 (12127) to 12116 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.373), width: 16 Scan time: 1.990 The best scores are: opt bits E(32554) CCDS12232.1 ICAM4 gene_id:3386|Hs108|chr19 ( 271) 1828 381.7 3e-106 CCDS42500.1 ICAM4 gene_id:3386|Hs108|chr19 ( 237) 1587 332.5 1.6e-91 CCDS32904.1 ICAM4 gene_id:3386|Hs108|chr19 ( 272) 912 195.0 4.9e-50 CCDS12233.1 ICAM5 gene_id:7087|Hs108|chr19 ( 924) 328 76.3 9e-14 CCDS11657.1 ICAM2 gene_id:3384|Hs108|chr17 ( 275) 289 68.0 8.4e-12 >>CCDS12232.1 ICAM4 gene_id:3386|Hs108|chr19 (271 aa) initn: 1828 init1: 1828 opt: 1828 Z-score: 2021.1 bits: 381.7 E(32554): 3e-106 Smith-Waterman score: 1828; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271) 10 20 30 40 50 60 pF1KE6 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTA 190 200 210 220 230 240 250 260 270 pF1KE6 LASGSIAALVGILLTVGAAYLCKCLAMKSQA ::::::::::::::::::::::::::::::: CCDS12 LASGSIAALVGILLTVGAAYLCKCLAMKSQA 250 260 270 >>CCDS42500.1 ICAM4 gene_id:3386|Hs108|chr19 (237 aa) initn: 1587 init1: 1587 opt: 1587 Z-score: 1756.4 bits: 332.5 E(32554): 1.6e-91 Smith-Waterman score: 1587; 98.7% identity (99.6% similar) in 236 aa overlap (1-236:1-236) 10 20 30 40 50 60 pF1KE6 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLAWSPAPTA ::::::::::::::::::::::::::::::::::::::::::::::::::::. .: CCDS42 ERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLDGLVVRNSSAPITLMLGEAPL 190 200 210 220 230 250 260 270 pF1KE6 LASGSIAALVGILLTVGAAYLCKCLAMKSQA >>CCDS32904.1 ICAM4 gene_id:3386|Hs108|chr19 (272 aa) initn: 910 init1: 910 opt: 912 Z-score: 1011.8 bits: 195.0 E(32554): 4.9e-50 Smith-Waterman score: 912; 93.7% identity (96.5% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE6 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MGSLFPLSLLFFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TRWATSRITAYKPPHSVILEPPVLKGRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESL :::::::::::. : ... : CCDS32 TRWATSRITAYSVPGGLLGGDPEAWKPGHLFRKPGALHRPGSGQRDLDLRVCCWTPRLLA 130 140 150 160 170 180 >>CCDS12233.1 ICAM5 gene_id:7087|Hs108|chr19 (924 aa) initn: 273 init1: 250 opt: 328 Z-score: 360.7 bits: 76.3 E(32554): 9e-14 Smith-Waterman score: 328; 33.0% identity (57.7% similar) in 227 aa overlap (47-264:33-249) 20 30 40 50 60 70 pF1KE6 YPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCSNSCPQP :::. ..:. . :. : :. ::::..::.: CCDS12 GPSPGLRRALLGLWAALGLGLFGLSAVSQEPFWADLQPRVAFVERGGSLWLNCSTNCPRP 10 20 30 40 50 60 80 90 100 110 120 130 pF1KE6 QNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATSRITAYKPPHS . ..:.: ::.. : :: :.. ::.:.: . :. :: .: : . : ... : CCDS12 ERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDR 70 80 90 100 110 120 140 150 160 170 180 190 pF1KE6 VILEP-PVLK--GRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERFTGLD--LANV : : : : . :...:: :.: . : . :..:: .:.. . .: :.: .. CCDS12 VELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS---FAGEPPRARGA 130 140 150 160 170 200 210 220 230 240 pF1KE6 TLTYEFAAGPRDFWQPVICHARLNL--DGL-VVRNSSAPITL-MLAWSPAPTALASGSIA .:: : .: :.:.:.: :: . .::::: : .. :: ::. CCDS12 VLTATVLARREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLSPDAPRLAAPR-- 180 190 200 210 220 230 250 260 270 pF1KE6 ALVGILLTVGAAYLCKCLAMKSQA :: ::. .: CCDS12 -----LLEVGSERPVSCTLDGLFPASEARVYLALGDQNLSPDVTLEGDAFVATATATASA 240 250 260 270 280 290 >>CCDS11657.1 ICAM2 gene_id:3384|Hs108|chr17 (275 aa) initn: 196 init1: 95 opt: 289 Z-score: 325.4 bits: 68.0 E(32554): 8.4e-12 Smith-Waterman score: 289; 27.0% identity (62.2% similar) in 230 aa overlap (41-262:20-245) 20 30 40 50 60 70 pF1KE6 FFLAAAYPGVGSALGRRTKRAQSPKGSPLAPSGTSVPFWVRMSPEFVAVQPGKSVQLNCS :.. : :.. :. .::.: :...::: CCDS11 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCS 10 20 30 40 80 90 100 110 120 130 pF1KE6 NSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRAWSSLAHCLVTCAGKTRWATSRITA ..: ::. ..:.: : . . : : . .. . ... .: ::.:: . .: ... CCDS11 TTCNQPEVGGLETSLDKILLDEQAQWKHYLVSNI-SHDTVLQCHFTCSGKQESMNSNVSV 50 60 70 80 90 100 140 150 160 170 180 pF1KE6 YKPPHSVIL--EPPVLK-GRKYTLRCHVTQVFPVGYLVVTLRHGSRVIYSESLERFTGLD :.::..::: .: .. :...:..:.: : :. :.. : .:..... :.. . . CCDS11 YQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE6 LANVTLTYEFAAGPRDFWQPVICHARLNL---DGLVVRNSSAPITLMLAWSPAPTALASG ..: :.. .: .: . : : :.: : . .. ::: .. . :. . CCDS11 -QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAP-KMLEIYEPVSDSQMV- 170 180 190 200 210 220 250 260 270 pF1KE6 SIAALVGILLT--VGAAYLCKCLAMKSQA :...:..::. : .. :: CCDS11 IIVTVVSVLLSLFVTSVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFRP 230 240 250 260 270 271 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:09:02 2016 done: Tue Nov 8 11:09:03 2016 Total Scan time: 1.990 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]