(Circular) (Six-base) MAPSORT of: pFN21AE4573.seq Check: 102 from: 1 to: 6931 pFN21AE4573 6931 bp With 182 enzymes: SgfI * March 28, 2012 14:17 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4741 278 Size: 53 83 186 936 3205 2468 Fragments arranged by size: 3205 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 4274 1937 Size: 2337 4594 Acc65I G'GTAC_C Cuts at: 4252 4252 Size: 6931 AclI AA'CG_TT Cuts at: 1563 3090 5058 5431 1563 Size: 1527 1968 373 3063 Fragments arranged by size: 3063 1968 1527 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2674 2781 3148 4109 4994 6378 6646 1632 Size: 1042 107 367 961 885 1384 268 1917 Fragments arranged by size: 1917 1384 1042 961 885 367 268 107 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6734 AflIII A'CryG_T Cuts at: 1203 2839 5830 6807 1203 Size: 1636 2991 977 1327 Fragments arranged by size: 2991 1636 1327 977 AgeI A'CCGG_T Cuts at: 5762 5762 Size: 6931 AhdI GACnn_n'nnGTC Cuts at: 2770 5660 2770 Size: 2890 4041 AleI CACnn'nnGTG Cuts at: 1166 3188 1166 Size: 2022 4909 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 6931 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 4056 4088 4056 Size: 32 6899 AlwNI CAG_nnn'CTG Cuts at: 2234 2954 4674 6246 2234 Size: 720 1720 1572 2919 Fragments arranged by size: 2919 1720 1572 720 ApaI G_GGCC'C Cuts at: 3181 3382 3460 3661 3802 4144 3181 Size: 201 78 201 141 342 5968 Fragments arranged by size: 5968 342 201 201 141 78 ApaLI G'TGCA_C Cuts at: 4988 6144 4988 Size: 1156 5775 ApoI r'AATT_y Cuts at: 1493 2291 2458 3135 4240 4466 4618 6727 1493 Size: 798 167 677 1105 226 152 2109 1697 Fragments arranged by size: 2109 1697 1105 798 677 226 167 152 AseI AT'TA_AT Cuts at: 160 1032 5485 160 Size: 872 4453 1606 Fragments arranged by size: 4453 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6931 AvaI C'yCGr_G Cuts at: 1870 1943 2256 3452 4256 1870 Size: 73 313 1196 804 4545 Fragments arranged by size: 4545 1196 804 313 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 3061 3094 3061 Size: 33 6898 BamHI G'GATC_C Cuts at: 2261 4261 4628 2261 Size: 2000 367 4564 Fragments arranged by size: 4564 2000 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 4252 5707 618 Size: 325 217 627 2465 1455 1842 Fragments arranged by size: 2465 1842 1455 627 325 217 BanII G_rGCy'C Cuts at: 1391 3172 3181 3382 3451 3460 3661 3802 3909 Size: 1781 9 201 69 9 201 141 107 Cuts at: 3909 4144 4250 1391 Size: 235 106 4072 Fragments arranged by size: 4072 1781 235 201 201 141 107 106 69 9 9 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2769 4100 928 Size: 971 870 1331 3759 Fragments arranged by size: 3759 1331 971 870 BbvCI CC'TCA_GC Cuts at: 3107 3107 Size: 6931 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 5122 5156 1903 Size: 34 50 34 3101 34 3678 Fragments arranged by size: 3678 3101 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4823 6033 4823 Size: 1210 5721 BclI T'GATC_A Cuts at: 1548 1548 Size: 6931 BfrBI ATG'CAT Cuts at: 4048 4048 Size: 6931 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 5542 136 Size: 107 122 71 631 605 3870 1525 Fragments arranged by size: 3870 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2828 3996 6926 2828 Size: 1168 2930 2833 Fragments arranged by size: 2930 2833 1168 BlpI GC'TnA_GC Cuts at: 3286 3749 4348 3286 Size: 463 599 5869 Fragments arranged by size: 5869 599 463 Bme1580I G_kGCm'C Cuts at: 1790 3181 3382 3460 3661 3802 4144 4992 6148 Size: 1391 201 78 201 141 342 848 1156 Cuts at: 6148 1790 Size: 2573 Fragments arranged by size: 2573 1391 1156 848 342 201 201 141 78 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 6931 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 4662 5620 442 Size: 416 53 83 399 24 3245 958 1753 Fragments arranged by size: 3245 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 4128 1056 Size: 3072 3859 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3249 3419 3889 3249 Size: 170 470 6291 Fragments arranged by size: 6291 470 170 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2452 2723 2740 3224 3318 3503 3597 3962 Size: 1213 271 17 484 94 185 94 365 Cuts at: 3962 3990 4021 5591 1239 Size: 28 31 1570 2579 Fragments arranged by size: 2579 1570 1213 484 365 271 185 94 94 31 28 17 Bpu10I CC'TnA_GC Cuts at: 3107 3107 Size: 6931 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3885 5056 5921 6219 3885 Size: 1171 865 298 4597 Fragments arranged by size: 4597 1171 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2633 5594 882 Size: 617 1134 2961 2219 Fragments arranged by size: 2961 2219 1134 617 BsaAI yAC'GTr Cuts at: 493 1204 2840 3114 4722 493 Size: 711 1636 274 1608 2702 Fragments arranged by size: 2702 1636 1608 711 274 BsaBI GATnn'nnATC Cuts at: 6925 6925 Size: 6931 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 4738 5120 5755 275 Size: 53 83 186 936 3205 382 635 1451 Fragments arranged by size: 3205 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2888 3139 3418 5364 5762 6036 6183 6594 2888 Size: 251 279 1946 398 274 147 411 3225 Fragments arranged by size: 3225 1946 411 398 279 274 251 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2106 2136 2334 2364 3935 Size: 30 165 30 703 30 198 30 1571 Cuts at: 3935 3965 1178 Size: 30 4144 Fragments arranged by size: 4144 1571 703 198 165 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2072 3315 3318 3594 1186 Size: 886 1243 3 276 4523 Fragments arranged by size: 4523 1243 886 276 3 BseYI C'CCAG_C Cuts at: 2643 3009 3381 3660 6134 6630 2643 Size: 366 372 279 2474 496 2944 Fragments arranged by size: 2944 2474 496 372 366 279 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 3099 1163 Size: 573 1363 4995 Fragments arranged by size: 4995 1363 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 4381 5142 6170 1540 Size: 275 186 2380 761 1028 2301 Fragments arranged by size: 2380 2301 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3750 4992 5077 6148 3750 Size: 1242 85 1071 4533 Fragments arranged by size: 4533 1242 1071 85 BsmI GAATG_Cn' Cuts at: 4442 4535 4442 Size: 93 6838 Bsp1286I G_dGCh'C Cuts at: 1391 1790 3172 3181 3382 3451 3460 3661 3750 Size: 399 1382 9 201 69 9 201 89 Cuts at: 3750 3802 3909 4144 4250 4992 5077 6148 1391 Size: 52 107 235 106 742 85 1071 2174 Fragments arranged by size: 2174 1382 1071 742 399 235 201 201 107 106 89 85 69 52 9 9 BspEI T'CCGG_A Cuts at: 6594 6594 Size: 6931 BspHI T'CATG_A Cuts at: 3259 4820 6550 3259 Size: 1561 1730 3640 Fragments arranged by size: 3640 1730 1561 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2715 3207 3486 4286 844 Size: 1871 492 279 800 3489 Fragments arranged by size: 3489 1871 800 492 279 BsrBI CCG'CTC Cuts at: 1394 1823 4818 1394 Size: 429 2995 3507 Fragments arranged by size: 3507 2995 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3964 5426 5600 65 Size: 1183 2716 1462 174 1396 Fragments arranged by size: 2716 1462 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 5575 5762 1700 Size: 110 3765 187 2869 Fragments arranged by size: 3765 2869 187 110 BsrGI T'GTAC_A Cuts at: 96 2842 3951 96 Size: 2746 1109 3076 Fragments arranged by size: 3076 2746 1109 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6931 BssSI C'ACGA_G Cuts at: 3539 4991 6003 3539 Size: 1452 1012 4467 Fragments arranged by size: 4467 1452 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 6931 BstBI TT'CG_AA Cuts at: 5735 5735 Size: 6931 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6931 BstYI r'GATC_y Cuts at: 1972 2217 2261 2742 2828 2877 3996 4261 4628 Size: 245 44 481 86 49 1119 265 367 Cuts at: 4628 5013 5030 6482 6568 6580 6926 1972 Size: 385 17 1452 86 12 346 1977 Fragments arranged by size: 1977 1452 1119 481 385 367 346 265 245 86 86 49 44 17 12 Bsu36I CC'TnA_GG Cuts at: 3443 3443 Size: 6931 BtgI C'CryG_G Cuts at: 513 1065 2093 513 Size: 552 1028 5351 Fragments arranged by size: 5351 1028 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 6192 Fragments arranged by size: 6192 683 56 BtsI GCAGTG_nn' Cuts at: 4447 5241 5261 4447 Size: 794 20 6117 Fragments arranged by size: 6117 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6931 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6896 DraI TTT'AAA Cuts at: 4235 4235 Size: 6931 DraIII CAC_nnn'GTG Cuts at: 3187 3187 Size: 6931 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 5938 809 Size: 507 4622 1802 Fragments arranged by size: 4622 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 4378 5267 6896 Size: 54 1425 50 275 18 2548 889 1629 Cuts at: 6896 8 Size: 43 Fragments arranged by size: 2548 1629 1425 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 4378 1537 Size: 275 2566 4090 Fragments arranged by size: 4090 2566 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2038 2602 2693 2977 4861 1353 Size: 685 564 91 284 1884 3423 Fragments arranged by size: 3423 1884 685 564 284 91 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 5518 5892 6038 387 Size: 1064 138 3929 374 146 1280 Fragments arranged by size: 3929 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2452 2674 2723 2740 2781 3148 3224 Size: 393 820 222 49 17 41 367 76 Cuts at: 3224 3318 3503 3597 3962 3990 4021 4109 4994 Size: 94 185 94 365 28 31 88 885 Cuts at: 4994 5591 6378 6646 1239 Size: 597 787 268 1524 Fragments arranged by size: 1524 885 820 787 597 393 367 365 268 222 185 94 94 88 76 49 41 31 28 17 EcoNI CCTnn'n_nnAGG Cuts at: 2159 3877 2159 Size: 1718 5213 EcoO109I rG'GnC_Cy Cuts at: 2727 3177 3196 3378 3456 3475 3657 3798 4140 Size: 450 19 182 78 19 182 141 342 Cuts at: 4140 2727 Size: 5518 Fragments arranged by size: 5518 450 342 182 182 141 78 19 19 EcoRI G'AATT_C Cuts at: 2458 3135 4240 4618 2458 Size: 677 1105 378 4771 Fragments arranged by size: 4771 1105 677 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2093 2093 Size: 6931 FspI TGC'GCA Cuts at: 5437 5437 Size: 6931 HaeII r_GCGC'y Cuts at: 1678 6078 1678 Size: 4400 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2020 2052 2253 2285 2334 Size: 32 135 32 448 32 201 32 49 Cuts at: 2334 2366 2727 2756 2759 2785 2788 2817 3883 Size: 32 361 29 3 26 3 29 1066 Cuts at: 3883 3915 5572 5604 5646 5678 1373 Size: 32 1657 32 42 32 2626 Fragments arranged by size: 2626 1657 1066 448 361 201 135 49 42 32 32 32 32 32 32 32 32 29 29 26 3 3 HincII GTy'rAC Cuts at: 669 1657 1938 4275 4521 669 Size: 988 281 2337 246 3079 Fragments arranged by size: 3079 2337 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6931 HpaI GTT'AAC Cuts at: 4521 4521 Size: 6931 KpnI G_GTAC'C Cuts at: 4256 4256 Size: 6931 MfeI C'AATT_G Cuts at: 4530 4530 Size: 6931 MluI A'CGCG_T Cuts at: 6807 6807 Size: 6931 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 6045 6229 1305 Size: 4740 184 2007 Fragments arranged by size: 4740 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 5109 Fragments arranged by size: 5109 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3188 3264 3390 3543 4889 5248 5407 Size: 648 2022 76 126 153 1346 359 159 Cuts at: 5407 518 Size: 2042 Fragments arranged by size: 2042 2022 1346 648 359 159 153 126 76 MspA1I CmG'CkG Cuts at: 1606 2674 2899 3083 3725 4347 5024 6172 6417 Size: 1068 225 184 642 622 677 1148 245 Cuts at: 6417 1606 Size: 2120 Fragments arranged by size: 2120 1148 1068 677 642 622 245 225 184 NcoI C'CATG_G Cuts at: 513 1065 2093 513 Size: 552 1028 5351 Fragments arranged by size: 5351 1028 552 NdeI CA'TA_TG Cuts at: 387 2132 387 Size: 1745 5186 NheI G'CTAG_C Cuts at: 1052 4124 1052 Size: 3072 3859 NotI GC'GGCC_GC Cuts at: 4378 4378 Size: 6931 NsiI A_TGCA'T Cuts at: 4050 4050 Size: 6931 NspI r_CATG'y Cuts at: 1132 1229 2288 3038 4289 5834 1132 Size: 97 1059 750 1251 1545 2229 Fragments arranged by size: 2229 1545 1251 1059 750 97 PasI CC'CwG_GG Cuts at: 1348 2161 2941 3174 3274 1348 Size: 813 780 233 100 5005 Fragments arranged by size: 5005 813 780 233 100 PciI A'CATG_T Cuts at: 5830 5830 Size: 6931 PflMI CCAn_nnn'nTGG Cuts at: 1108 3187 3466 1108 Size: 2079 279 4573 Fragments arranged by size: 4573 2079 279 PfoI T'CCnGG_A Cuts at: 2038 3701 3887 3967 2038 Size: 1663 186 80 5002 Fragments arranged by size: 5002 1663 186 80 PmeI GTTT'AAAC Cuts at: 4235 4235 Size: 6931 PmlI CAC'GTG Cuts at: 3114 3114 Size: 6931 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5000 5032 6513 6545 5000 Size: 32 1481 32 5386 Fragments arranged by size: 5386 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2727 3196 3475 2727 Size: 469 279 6183 Fragments arranged by size: 6183 469 279 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6931 PsiI TTA'TAA Cuts at: 2436 4501 2436 Size: 2065 4866 PspOMI G'GGCC_C Cuts at: 3177 3378 3456 3657 3798 4140 3177 Size: 201 78 201 141 342 5968 Fragments arranged by size: 5968 342 201 201 141 78 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 3703 3735 3703 Size: 32 6899 PstI C_TGCA'G Cuts at: 830 2319 3334 4117 4283 830 Size: 1489 1015 783 166 3478 Fragments arranged by size: 3478 1489 1015 783 166 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6931 PvuII CAG'CTG Cuts at: 2674 2899 3083 2674 Size: 225 184 6522 Fragments arranged by size: 6522 225 184 SalI G'TCGA_C Cuts at: 1936 4273 1936 Size: 2337 4594 SapI GCTCTTCn'nnn_ Cuts at: 2602 2602 Size: 6931 SbfI CC_TGCA'GG Cuts at: 2319 4283 2319 Size: 1964 4967 ScaI AGT'ACT Cuts at: 5179 6891 5179 Size: 1712 5219 SfcI C'TryA_G Cuts at: 826 1045 2315 3330 3609 4113 4279 5414 6095 Size: 219 1270 1015 279 504 166 1135 681 Cuts at: 6095 6286 826 Size: 191 1471 Fragments arranged by size: 1471 1270 1135 1015 681 504 279 219 191 166 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6931 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6931 SmaI CCC'GGG Cuts at: 1872 3454 4258 1872 Size: 1582 804 4545 Fragments arranged by size: 4545 1582 804 SmlI C'TyrA_G Cuts at: 820 1017 1943 3900 5035 5936 6198 820 Size: 197 926 1957 1135 901 262 1553 Fragments arranged by size: 1957 1553 1135 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 4722 493 Size: 4229 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6931 SphI G_CATG'C Cuts at: 1132 4289 1132 Size: 3157 3774 SspI AAT'ATT Cuts at: 5 52 4177 4855 5 Size: 47 4125 678 2081 Fragments arranged by size: 4125 2081 678 47 StuI AGG'CCT Cuts at: 1517 3717 3883 1517 Size: 2200 166 4565 Fragments arranged by size: 4565 2200 166 StyI C'CwwG_G Cuts at: 513 1065 2093 3552 4370 513 Size: 552 1028 1459 818 3074 Fragments arranged by size: 3074 1459 1028 818 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 4116 4958 4975 5128 5313 5758 325 Size: 1255 2536 842 17 153 185 445 1498 Fragments arranged by size: 2536 1498 1255 842 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2074 2492 2842 Size: 274 80 33 51 1443 97 418 350 Cuts at: 2842 3525 3951 5177 6889 96 Size: 683 426 1226 1712 138 Fragments arranged by size: 1712 1443 1226 683 426 418 350 274 138 97 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2106 2138 3203 3235 3482 3514 6891 6923 2106 Size: 32 1065 32 247 32 3377 32 2114 Fragments arranged by size: 3377 2114 1065 247 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 2348 1316 Size: 1032 5899 XbaI T'CTAG_A Cuts at: 2872 4267 2872 Size: 1395 5536 XcmI CCAnnnn_n'nnnnTGG Cuts at: 3389 3389 Size: 6931 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6931 XmaI C'CCGG_G Cuts at: 1870 3452 4256 1870 Size: 1582 804 4545 Fragments arranged by size: 4545 1582 804 XmnI GAAnn'nnTTC Cuts at: 5060 5060 Size: 6931 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4739 276 Size: 53 83 186 936 3205 2468 Fragments arranged by size: 3205 2468 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PsiI PspOMI PsrI PstI PvuI PvuII SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AscI AvrII BbeI BsiWI BsmBI BstXI BstZ17I EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PspXI RsrII SacI SacII SanDI SexAI SfiI SfoI SrfI SwaI