FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3947, 1098 aa
  1>>>pF1KE3947 1098 - 1098 aa - 1098 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6074+/-0.000991; mu= 21.3079+/- 0.060
 mean_var=80.0129+/-15.249, 0's: 0 Z-trim(104.9): 28  B-trim: 0 in 0/52
 Lambda= 0.143382
 statistics sampled from 8152 (8165) to 8152 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.251), width:  16
 Scan time:  4.680

The best scores are:                                      opt bits E(32554)
CCDS6725.1 TDRD7 gene_id:23424|Hs108|chr9          (1098) 7326 1525.9       0


>>CCDS6725.1 TDRD7 gene_id:23424|Hs108|chr9               (1098 aa)
 initn: 7326 init1: 7326 opt: 7326  Z-score: 8183.1  bits: 1525.9 E(32554):    0
Smith-Waterman score: 7326; 99.8% identity (99.8% similar) in 1098 aa overlap (1-1098:1-1098)

               10        20        30        40        50        60
pF1KE3 MLEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLRSVPAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MLEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLRSVPAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RIETSRSGEITCYAMACTETARIAQLVARQRSSKRKTGRQVNCQMRVKKTMPFFLEGKPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 RIETSRSGEITCYAMACTETARIAQLVARQRSSKRKTGRQVNCQMRVKKTMPFFLEGKPK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ATLRQPGFASNFSVGKKPNPAPLRDKGNSVGVKPDAEMSPYMLHTTLGNEAFKDIPVQRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ATLRQPGFASNFSVGKKPNPAPLRDKGNSVGVKPDAEMSPYMLHTTLGNEAFKDIPVQRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VTMSTNNRFSPKASLQPPLQMHLSRTSTKEMSDNLNQTVEKPNVKPPASYTYKMDEVQNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VTMSTNNRFSPKASLQPPLQMHLSRTSTKEMSDNLNQTVEKPNVKPPASYTYKMDEVQNR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 IKEILNKHNNGIWISKLPHFYKELYKEDLNQGILQQFEHWPHICTVEKPCSGGQDLLLYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 IKEILNKHNNGIWISKLPHFYKELYKEDLNQGILQQFEHWPHICTVEKPCSGGQDLLLYP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 AKRKQLLRSELDTEKVPLSPLPGPKQTPPLKGCPTVMAGDFKEKVADLLVKYTSGLWASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AKRKQLLRSELDTEKVPLSPLPGPKQTPPLKGCPTVMAGDFKEKVADLLVKYTSGLWASA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LPKAFEEMYKVKFPEDALKNLASLSDVCSIDYISGNPQKAILYAKLPLPTDKIQKDAGQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LPKAFEEMYKVKFPEDALKNLASLSDVCSIDYISGNPQKAILYAKLPLPTDKIQKDAGQA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 HGDNDIKAMVEQEYLQVEESIAESANTFMEDITVPLLMIPTEASPSVLVVELSNTNEVVI
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS67 HGDNDIKAMVEQEYLQVEESIAESANTFMEDITVPPLMIPTEASPSVLVVELSNTNEVVI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 RYVGKDYSAAQELMEDEMKEYYSKNPKITPVQAVNVGQLLAVNAEEDAWLRAQVISTEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 RYVGKDYSAAQELMEDEMKEYYSKNPKITPVQAVNVGQLLAVNAEEDAWLRAQVISTEEN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 KIKVCYVDYGFSENVEKSKAYKLNPKFCSLSFQATKCKLAGLEVLSDDPDLVKVVESLTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 KIKVCYVDYGFSENVEKSKAYKLNPKFCSLSFQATKCKLAGLEVLSDDPDLVKVVESLTC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 GKIFAVEILDKADIPLVVLYDTSGEDDININATCLKAICDKSLEVHLQVDAMYTNVKVTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GKIFAVEILDKADIPLVVLYDTSGEDDININATCLKAICDKSLEVHLQVDAMYTNVKVTN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 ICSDGTLYCQVPCKGLNKLSDLLRKIEDYFHCKHMTSECFVSLPFCGKICLFHCKGKWLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ICSDGTLYCQVPCKGLNKLSDLLRKIEDYFHCKHMTSECFVSLPFCGKICLFHCKGKWLR
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 VEITNVHSSRALDVQFLDSGTVTSVKVSELREIPPRFLQEMIAIPPQAIKCCLADLPQSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 VEITNVHSSRALDVQFLDSGTVTSVKVSELREIPPRFLQEMIAIPPQAIKCCLADLPQSI
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE3 GMWTPDAVLWLRDSVLNCSDCSIKVTKVDETRGIAHVYLFTPKNFPDPHRSINRQITNAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 GMWTPDAVLWLRDSVLNCSDCSIKVTKVDETRGIAHVYLFTPKNFPDPHRSINRQITNAD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE3 LWKHQKDVFLSAISSGADSPNSKNGNMPMSGNTGENFRKNLTDVIKKSMVDHTSAFSTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LWKHQKDVFLSAISSGADSPNSKNGNMPMSGNTGENFRKNLTDVIKKSMVDHTSAFSTEE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE3 LPPPVHLSKPGEHMDVYVPVACHPGYFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LPPPVHLSKPGEHMDVYVPVACHPGYFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAVE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE3 KDQVYAAKVENKWHRVLLKGILTNGLVSVYELDYDKHELVNIRKVQPLVDMFRKLPFQAV
       :::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS67 KDQVYAAKVENKWHRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLVDMFRKLPFQAV
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE3 TAQLAGVKCNQWSEEASMVFRNHVEKKPLVALVQTVIENANPWDRKVVVYLVDTSLPDTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TAQLAGVKCNQWSEEASMVFRNHVEKKPLVALVQTVIENANPWDRKVVVYLVDTSLPDTD
             1030      1040      1050      1060      1070      1080

             1090        
pF1KE3 TWIHDFMSEYLIELSKVN
       ::::::::::::::::::
CCDS67 TWIHDFMSEYLIELSKVN
             1090        




1098 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:41:23 2016 done: Sun Nov  6 08:41:24 2016
 Total Scan time:  4.680 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]