FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6232, 300 aa
  1>>>pF1KE6232 300 - 300 aa - 300 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0385+/-0.000319; mu= 17.0914+/- 0.020
 mean_var=65.0851+/-12.949, 0's: 0 Z-trim(116.1): 10  B-trim: 0 in 0/55
 Lambda= 0.158977
 statistics sampled from 26968 (26978) to 26968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.316), width:  16
 Scan time:  5.730

The best scores are:                                      opt bits E(85289)
NP_003163 (OMIM: 185620,256000,616684) surfeit loc ( 300) 2025 472.9 3.4e-133
XP_011517244 (OMIM: 185620,256000,616684) PREDICTE ( 191) 1301 306.7 2.3e-83
NP_001267716 (OMIM: 185620,256000,616684) surfeit  ( 191) 1301 306.7 2.3e-83


>>NP_003163 (OMIM: 185620,256000,616684) surfeit locus p  (300 aa)
 initn: 2025 init1: 2025 opt: 2025  Z-score: 2512.2  bits: 472.9 E(85289): 3.4e-133
Smith-Waterman score: 2025; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KE6 MAAVAALQLGLRAAGLGRAPASAAWRSVLRVSPRPGVAWRPSRCGSSAAEASATKAEDDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAAVAALQLGLRAAGLGRAPASAAWRSVLRVSPRPGVAWRPSRCGSSAAEASATKAEDDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FLQWVLLLIPVTAFGLGTWQVQRRKWKLNLIAELESRVLAEPVPLPADPMELKNLEYRPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FLQWVLLLIPVTAFGLGTWQVQRRKWKLNLIAELESRVLAEPVPLPADPMELKNLEYRPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 KVRGCFDHSKELYMMPRTMVDPVREAREGGLISSSTQSGAYVVTPFHCTDLGVTILVNRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KVRGCFDHSKELYMMPRTMVDPVREAREGGLISSSTQSGAYVVTPFHCTDLGVTILVNRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FVPRKKVNPETRQKGQIEGEVDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAMARITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FVPRKKVNPETRQKGQIEGEVDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAMARITG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 AEPIFIDANFQSTVPGGPIGGQTRVTLRNEHLQYIVTWYGLSAATSYLWFKKFLRGTPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEPIFIDANFQSTVPGGPIGGQTRVTLRNEHLQYIVTWYGLSAATSYLWFKKFLRGTPGV
              250       260       270       280       290       300

>>XP_011517244 (OMIM: 185620,256000,616684) PREDICTED: s  (191 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1617.6  bits: 306.7 E(85289): 2.3e-83
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 191 aa overlap (110-300:1-191)

      80        90       100       110       120       130         
pF1KE6 QVQRRKWKLNLIAELESRVLAEPVPLPADPMELKNLEYRPVKVRGCFDHSKELYMMPRTM
                                     ::::::::::::::::::::::::::::::
XP_011                               MELKNLEYRPVKVRGCFDHSKELYMMPRTM
                                             10        20        30

     140       150       160       170       180       190         
pF1KE6 VDPVREAREGGLISSSTQSGAYVVTPFHCTDLGVTILVNRGFVPRKKVNPETRQKGQIEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDPVREAREGGLISSSTQSGAYVVTPFHCTDLGVTILVNRGFVPRKKVNPETRQKGQIEG
               40        50        60        70        80        90

     200       210       220       230       240       250         
pF1KE6 EVDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAMARITGAEPIFIDANFQSTVPGGPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAMARITGAEPIFIDANFQSTVPGGPI
              100       110       120       130       140       150

     260       270       280       290       300
pF1KE6 GGQTRVTLRNEHLQYIVTWYGLSAATSYLWFKKFLRGTPGV
       :::::::::::::::::::::::::::::::::::::::::
XP_011 GGQTRVTLRNEHLQYIVTWYGLSAATSYLWFKKFLRGTPGV
              160       170       180       190 

>>NP_001267716 (OMIM: 185620,256000,616684) surfeit locu  (191 aa)
 initn: 1301 init1: 1301 opt: 1301  Z-score: 1617.6  bits: 306.7 E(85289): 2.3e-83
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 191 aa overlap (110-300:1-191)

      80        90       100       110       120       130         
pF1KE6 QVQRRKWKLNLIAELESRVLAEPVPLPADPMELKNLEYRPVKVRGCFDHSKELYMMPRTM
                                     ::::::::::::::::::::::::::::::
NP_001                               MELKNLEYRPVKVRGCFDHSKELYMMPRTM
                                             10        20        30

     140       150       160       170       180       190         
pF1KE6 VDPVREAREGGLISSSTQSGAYVVTPFHCTDLGVTILVNRGFVPRKKVNPETRQKGQIEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDPVREAREGGLISSSTQSGAYVVTPFHCTDLGVTILVNRGFVPRKKVNPETRQKGQIEG
               40        50        60        70        80        90

     200       210       220       230       240       250         
pF1KE6 EVDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAMARITGAEPIFIDANFQSTVPGGPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVDLIGMVRLTETRQPFVPENNPERNHWHYRDLEAMARITGAEPIFIDANFQSTVPGGPI
              100       110       120       130       140       150

     260       270       280       290       300
pF1KE6 GGQTRVTLRNEHLQYIVTWYGLSAATSYLWFKKFLRGTPGV
       :::::::::::::::::::::::::::::::::::::::::
NP_001 GGQTRVTLRNEHLQYIVTWYGLSAATSYLWFKKFLRGTPGV
              160       170       180       190 




300 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 11:18:39 2016 done: Tue Nov  8 11:18:40 2016
 Total Scan time:  5.730 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]