FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1508, 142 aa 1>>>pF1KE1508 142 - 142 aa - 142 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3427+/-0.00037; mu= 10.6498+/- 0.023 mean_var=54.3260+/-10.701, 0's: 0 Z-trim(112.8): 21 B-trim: 989 in 2/52 Lambda= 0.174009 statistics sampled from 21828 (21848) to 21828 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.256), width: 16 Scan time: 5.000 The best scores are: opt bits E(85289) XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin ( 142) 909 236.0 1.6e-62 NP_005323 (OMIM: 142310) hemoglobin subunit zeta [ ( 142) 909 236.0 1.6e-62 XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin ( 154) 909 236.0 1.7e-62 NP_000549 (OMIM: 140700,141800,604131,613978) hemo ( 142) 563 149.1 2.2e-36 NP_000508 (OMIM: 140700,141850,604131,613978) hemo ( 142) 563 149.1 2.2e-36 NP_005322 (OMIM: 142240) hemoglobin subunit theta- ( 142) 485 129.5 1.7e-30 NP_001003938 (OMIM: 609639) hemoglobin subunit mu ( 141) 436 117.2 8.8e-27 NP_000550 (OMIM: 141749,142200) hemoglobin subunit ( 147) 362 98.7 3.6e-21 NP_000175 (OMIM: 141749,142250,613977) hemoglobin ( 147) 362 98.7 3.6e-21 NP_005321 (OMIM: 142100) hemoglobin subunit epsilo ( 147) 357 97.4 8.5e-21 NP_000510 (OMIM: 142000) hemoglobin subunit delta ( 147) 330 90.6 9.3e-19 NP_000509 (OMIM: 140700,141749,141900,603902,60390 ( 147) 321 88.4 4.5e-18 NP_005359 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 230 65.5 3.5e-11 NP_976312 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 230 65.5 3.5e-11 XP_005261662 (OMIM: 160000) PREDICTED: myoglobin i ( 154) 230 65.5 3.5e-11 NP_976311 (OMIM: 160000) myoglobin [Homo sapiens] ( 154) 230 65.5 3.5e-11 NP_599030 (OMIM: 608759) cytoglobin [Homo sapiens] ( 190) 186 54.5 9e-08 XP_005257062 (OMIM: 608759) PREDICTED: cytoglobin ( 202) 186 54.5 9.6e-08 XP_016879605 (OMIM: 608759) PREDICTED: cytoglobin ( 137) 183 53.7 1.1e-07 >>XP_005255345 (OMIM: 142310) PREDICTED: hemoglobin subu (142 aa) initn: 909 init1: 909 opt: 909 Z-score: 1243.5 bits: 236.0 E(85289): 1.6e-62 Smith-Waterman score: 909; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 70 80 90 100 110 120 130 140 pF1KE1 EAHAAWDKFLSVVSSVLTEKYR :::::::::::::::::::::: XP_005 EAHAAWDKFLSVVSSVLTEKYR 130 140 >>NP_005323 (OMIM: 142310) hemoglobin subunit zeta [Homo (142 aa) initn: 909 init1: 909 opt: 909 Z-score: 1243.5 bits: 236.0 E(85289): 1.6e-62 Smith-Waterman score: 909; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 70 80 90 100 110 120 130 140 pF1KE1 EAHAAWDKFLSVVSSVLTEKYR :::::::::::::::::::::: NP_005 EAHAAWDKFLSVVSSVLTEKYR 130 140 >>XP_005255344 (OMIM: 142310) PREDICTED: hemoglobin subu (154 aa) initn: 909 init1: 909 opt: 909 Z-score: 1242.9 bits: 236.0 E(85289): 1.7e-62 Smith-Waterman score: 909; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:13-154) 10 20 30 40 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFD :::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MTCFFDAAHPAAMSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFD 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 LHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLV 70 80 90 100 110 120 110 120 130 140 pF1KE1 TLAARFPADFTAEAHAAWDKFLSVVSSVLTEKYR :::::::::::::::::::::::::::::::::: XP_005 TLAARFPADFTAEAHAAWDKFLSVVSSVLTEKYR 130 140 150 >>NP_000549 (OMIM: 140700,141800,604131,613978) hemoglob (142 aa) initn: 563 init1: 563 opt: 563 Z-score: 774.1 bits: 149.1 E(85289): 2.2e-36 Smith-Waterman score: 563; 59.9% identity (83.1% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG : :. ...: . . :.:....: :.:.:::.::: : :::::::::: ::::...:: NP_000 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA .::. :. .:: .::. .::: ::.:::. :::::::::::::::::::::..::.:: NP_000 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 70 80 90 100 110 120 130 140 pF1KE1 EAHAAWDKFLSVVSSVLTEKYR .::. ::::. ::.::: ::: NP_000 AVHASLDKFLASVSTVLTSKYR 130 140 >>NP_000508 (OMIM: 140700,141850,604131,613978) hemoglob (142 aa) initn: 563 init1: 563 opt: 563 Z-score: 774.1 bits: 149.1 E(85289): 2.2e-36 Smith-Waterman score: 563; 59.9% identity (83.1% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG : :. ...: . . :.:....: :.:.:::.::: : :::::::::: ::::...:: NP_000 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA .::. :. .:: .::. .::: ::.:::. :::::::::::::::::::::..::.:: NP_000 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 70 80 90 100 110 120 130 140 pF1KE1 EAHAAWDKFLSVVSSVLTEKYR .::. ::::. ::.::: ::: NP_000 AVHASLDKFLASVSTVLTSKYR 130 140 >>NP_005322 (OMIM: 142240) hemoglobin subunit theta-1 [H (142 aa) initn: 485 init1: 485 opt: 485 Z-score: 668.3 bits: 129.5 E(85289): 1.7e-30 Smith-Waterman score: 485; 52.1% identity (80.3% similar) in 142 aa overlap (1-142:1-142) 10 20 30 40 50 60 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG :.:. .:... ..: :..... . ::.::: ::. : ::::: :.:: :::.:.:::: NP_005 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA .::. :.. ::. .::. ::: ::.::: :::::..:.::.:::::::: ..:.::. NP_005 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 70 80 90 100 110 120 130 140 pF1KE1 EAHAAWDKFLSVVSSVLTEKYR .:. ::::: : :.:. .:: NP_005 ALQASLDKFLSHVISALVSEYR 130 140 >>NP_001003938 (OMIM: 609639) hemoglobin subunit mu [Hom (141 aa) initn: 436 init1: 436 opt: 436 Z-score: 601.8 bits: 117.2 E(85289): 8.8e-27 Smith-Waterman score: 436; 47.9% identity (77.9% similar) in 140 aa overlap (3-142:2-141) 10 20 30 40 50 60 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG :. ::. :...: :. . .:.: : ::: .:.::.::::.. ..:: .:: NP_001 MLSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHG 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA ....:::: ::. .:.. .::: :..::: .:::::.:: :: .:. :.::... .::. NP_001 QRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFTV 60 70 80 90 100 110 130 140 pF1KE1 EAHAAWDKFLSVVSSVLTEKYR . .:::::::. :. ::::::: NP_001 QMQAAWDKFLTGVAVVLTEKYR 120 130 140 >>NP_000550 (OMIM: 141749,142200) hemoglobin subunit gam (147 aa) initn: 324 init1: 272 opt: 362 Z-score: 501.1 bits: 98.7 E(85289): 3.6e-21 Smith-Waterman score: 362; 40.0% identity (77.2% similar) in 145 aa overlap (3-141:4-146) 10 20 30 40 50 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-DLHPGSA---- .:. ... :.:.:.:.... : ::: ::.. .: :. .: : .: .:: NP_000 MGHFTEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 -QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAAR ...:::.::....:::.: .::. :....::::: :.::: :::::.. :...:: . NP_000 PKVKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH 60 70 80 90 100 110 120 130 140 pF1KE1 FPADFTAEAHAAWDKFLSVVSSVLTEKYR : .:: :..:.:.:....:.:.:. .: NP_000 FGKEFTPEVQASWQKMVTAVASALSSRYH 120 130 140 >>NP_000175 (OMIM: 141749,142250,613977) hemoglobin subu (147 aa) initn: 324 init1: 272 opt: 362 Z-score: 501.1 bits: 98.7 E(85289): 3.6e-21 Smith-Waterman score: 362; 40.0% identity (76.6% similar) in 145 aa overlap (3-141:4-146) 10 20 30 40 50 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-DLHPGSA---- .:. ... :.:.:.:.... : ::: ::.. .: :. .: : .: .:: NP_000 MGHFTEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGN 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 -QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAAR ...:::.::....:::.: .::. :....::::: :.::: :::::.. :...:: . NP_000 PKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIH 60 70 80 90 100 110 120 130 140 pF1KE1 FPADFTAEAHAAWDKFLSVVSSVLTEKYR : .:: :..:.:.:... :.:.:. .: NP_000 FGKEFTPEVQASWQKMVTGVASALSSRYH 120 130 140 >>NP_005321 (OMIM: 142100) hemoglobin subunit epsilon [H (147 aa) initn: 287 init1: 287 opt: 357 Z-score: 494.4 bits: 97.4 E(85289): 8.5e-21 Smith-Waterman score: 357; 40.0% identity (75.9% similar) in 145 aa overlap (3-141:4-146) 10 20 30 40 50 pF1KE1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF-DLH-P----GS .: :.. ..:.:.:.... : :.: ::.. .: :. .: : .: : :. NP_005 MVHFTAEEKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGN 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAAR ...:::.::... :::.:..:.. :..:::::: :.::: :::::.. ... ::.. NP_005 PKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATH 60 70 80 90 100 110 120 130 140 pF1KE1 FPADFTAEAHAAWDKFLSVVSSVLTEKYR : .:: :..:::.:..:.:. .:..:: NP_005 FGKEFTPEVQAAWQKLVSAVAIALAHKYH 120 130 140 142 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:35:22 2016 done: Sun Nov 6 22:35:23 2016 Total Scan time: 5.000 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]