FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3673, 370 aa 1>>>pF1KE3673 370 - 370 aa - 370 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7822+/-0.000407; mu= 14.3147+/- 0.025 mean_var=85.3373+/-17.879, 0's: 0 Z-trim(112.3): 234 B-trim: 415 in 1/54 Lambda= 0.138837 statistics sampled from 20892 (21164) to 20892 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.248), width: 16 Scan time: 7.970 The best scores are: opt bits E(85289) NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 2190 448.8 8.9e-126 NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 2150 440.8 2.3e-123 XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 1988 408.4 1.3e-113 NP_001273696 (OMIM: 612849) ubiquitin carboxyl-ter ( 354) 1879 386.5 4.9e-107 NP_001273697 (OMIM: 612849) ubiquitin carboxyl-ter ( 225) 1280 266.4 4.4e-71 XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 421 94.8 8.6e-19 XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 421 94.8 8.6e-19 NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 421 94.8 9.2e-19 XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19 XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19 XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19 XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 421 94.8 9.8e-19 XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 421 94.8 1e-18 XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 421 94.8 1e-18 NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 421 94.8 1e-18 NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 421 94.8 1e-18 XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin c ( 351) 311 72.5 1.7e-12 XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 311 72.5 2e-12 XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 311 72.5 2e-12 NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 311 72.6 2.2e-12 XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 311 72.6 2.2e-12 XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 311 72.6 2.2e-12 XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 311 72.6 2.2e-12 NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 311 72.6 2.3e-12 XP_011523373 (OMIM: 612543) PREDICTED: ubiquitin c ( 739) 309 72.3 4.1e-12 XP_011523372 (OMIM: 612543) PREDICTED: ubiquitin c ( 914) 309 72.3 4.8e-12 XP_011523371 (OMIM: 612543) PREDICTED: ubiquitin c ( 925) 309 72.3 4.9e-12 XP_011523370 (OMIM: 612543) PREDICTED: ubiquitin c ( 959) 309 72.4 5e-12 XP_016880390 (OMIM: 612543) PREDICTED: ubiquitin c (1044) 309 72.4 5.4e-12 XP_005257599 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 309 72.4 5.7e-12 XP_016880389 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 309 72.4 5.7e-12 XP_005257600 (OMIM: 612543) PREDICTED: ubiquitin c (1123) 309 72.4 5.7e-12 NP_001308220 (OMIM: 612543) ubiquitin carboxyl-ter (1123) 309 72.4 5.7e-12 XP_011523367 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 309 72.4 5.7e-12 XP_011523369 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 309 72.4 5.7e-12 XP_011523368 (OMIM: 612543) PREDICTED: ubiquitin c (1124) 309 72.4 5.7e-12 NP_001273387 (OMIM: 602519) ubiquitin carboxyl-ter (1003) 292 69.0 5.5e-11 NP_001308787 (OMIM: 602519) ubiquitin carboxyl-ter (1044) 292 69.0 5.7e-11 XP_016879142 (OMIM: 602519) PREDICTED: ubiquitin c (1097) 292 69.0 5.9e-11 NP_003461 (OMIM: 602519) ubiquitin carboxyl-termin (1102) 292 69.0 5.9e-11 XP_016879141 (OMIM: 602519) PREDICTED: ubiquitin c (1113) 292 69.0 6e-11 XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 283 66.9 8.3e-11 NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 283 66.9 8.5e-11 NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 283 66.9 9.1e-11 XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 283 67.0 1.3e-10 NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 283 67.0 1.3e-10 XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 283 67.0 1.3e-10 NP_958804 (OMIM: 610186) ubiquitin carboxyl-termin ( 530) 280 66.4 1.7e-10 NP_001273386 (OMIM: 602519) ubiquitin carboxyl-ter (1086) 283 67.2 2e-10 NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565) 275 65.4 3.7e-10 >>NP_073743 (OMIM: 612849) ubiquitin carboxyl-terminal h (366 aa) initn: 2242 init1: 2190 opt: 2190 Z-score: 2379.1 bits: 448.8 E(85289): 8.9e-126 Smith-Waterman score: 2190; 88.3% identity (96.2% similar) in 366 aa overlap (5-370:1-366) 10 20 30 40 50 60 pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC ::: ..::::.::.:::::::.:::::::.:::::::::::::::::::::::::: NP_073 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY :::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.::::: NP_073 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL :::::::::::::::::::::::.:::::::.: :::... .:. :. ::: ::::::: NP_073 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ :::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : ::: NP_073 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY ::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: :::: NP_073 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES :::::::::::::::::::.::::: :::::::::::::::::::::::::::::::::: NP_073 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES 300 310 320 330 340 350 370 pF1KE3 GYILFYQSRD :::::::::. NP_073 GYILFYQSRE 360 >>NP_001127695 (OMIM: 612849) ubiquitin carboxyl-termina (359 aa) initn: 2183 init1: 2131 opt: 2150 Z-score: 2335.9 bits: 440.8 E(85289): 2.3e-123 Smith-Waterman score: 2150; 88.5% identity (96.1% similar) in 357 aa overlap (14-370:3-359) 10 20 30 40 50 60 pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC : .:.:::::::.:::::::.:::::::::::::::::::::::::: NP_001 MNCFQGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC 10 20 30 40 70 80 90 100 110 120 pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY :::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.::::: NP_001 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL :::::::::::::::::::::::.:::::::.: :::... .:. :. ::: ::::::: NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ :::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : ::: NP_001 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY ::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: :::: NP_001 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES :::::::::::::::::::.::::: :::::::::::::::::::::::::::::::::: NP_001 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES 290 300 310 320 330 340 370 pF1KE3 GYILFYQSRD :::::::::. NP_001 GYILFYQSRE 350 >>XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin carbo (341 aa) initn: 1988 init1: 1988 opt: 1988 Z-score: 2160.9 bits: 408.4 E(85289): 1.3e-113 Smith-Waterman score: 1988; 87.4% identity (95.8% similar) in 333 aa overlap (5-337:1-333) 10 20 30 40 50 60 pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC ::: ..::::.::.:::::::.:::::::.:::::::::::::::::::::::::: XP_016 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFC 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY :::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.::::: XP_016 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL :::::::::::::::::::::::.:::::::.: :::... .:. :. ::: ::::::: XP_016 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ :::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : ::: XP_016 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY ::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: :::: XP_016 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES :::::::::::::::::::.::::: ::::::::::: XP_016 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEVGLQIILQ 300 310 320 330 340 370 pF1KE3 GYILFYQSRD >>NP_001273696 (OMIM: 612849) ubiquitin carboxyl-termina (354 aa) initn: 2139 init1: 1877 opt: 1879 Z-score: 2042.7 bits: 386.5 E(85289): 4.9e-107 Smith-Waterman score: 2065; 85.0% identity (92.9% similar) in 366 aa overlap (5-370:1-354) 10 20 30 40 50 60 pF1KE3 MEILMTVSKFASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFC ::: ..::::.::.:::::::.:::::::.::::::::: ::::: NP_001 MTVRNIASICNMGTNASALEKDIGPEQFPINEHYFGLVN------------ALYFC 10 20 30 40 70 80 90 100 110 120 pF1KE3 RPFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNY :::::.:::::.: .:::.::::::::::::::::::::::::::::.::::::.::::: NP_001 RPFRENVLAYKAQQKKKENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNY 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 MQQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTWVDEIFQGTL :::::::::::::::::::::::.:::::::.: :::... .:. :. ::: ::::::: NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKNGNMNEPAENNKPELTWVHEIFQGTL 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE3 TNETRCLTCETISSKDEDFLDLSVDVEQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQ :::::::.:::.::::::::::::::::::::::::: :::::::::: ::::: : ::: NP_001 TNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE3 EAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPDRMY ::.:::.::::::::::::::::::.::::::::::::::::::::::::.::.: :::: NP_001 EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRLFNTSSDAVNLDRMY 230 240 250 260 270 280 310 320 330 340 350 360 pF1KE3 DLVAVVVHCGSGPNRGHYIAIVKSHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES :::::::::::::::::::.::::: :::::::::::::::::::::::::::::::::: NP_001 DLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSES 290 300 310 320 330 340 370 pF1KE3 GYILFYQSRD :::::::::. NP_001 GYILFYQSRE 350 >>NP_001273697 (OMIM: 612849) ubiquitin carboxyl-termina (225 aa) initn: 1280 init1: 1280 opt: 1280 Z-score: 1397.1 bits: 266.4 E(85289): 4.4e-71 Smith-Waterman score: 1280; 87.1% identity (94.5% similar) in 217 aa overlap (121-337:1-217) 100 110 120 130 140 150 pF1KE3 IATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADILQEERKQEKQN :::::::::::::::::::::::.:::::: NP_001 MQQDAHEFLNYLLNTIADILQEEKKQEKQN 10 20 30 160 170 180 190 200 210 pF1KE3 GRLPNGNIDNENNNSTPDPTWVDEIFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNT :.: :::... .:. :. ::: ::::::::::::::.:::.:::::::::::::::::: NP_001 GKLKNGNMNEPAENNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNT 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE3 SITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHR ::::::: :::::::::: ::::: : :::::.:::.::::::::::::::::::.:::: NP_001 SITHCLRDFSNTETLCSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHR 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE3 YTKLSYRVVFPLELRLFNTSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKSHDFWLL ::::::::::::::::::::.::.: :::::::::::::::::::::::.::::: :::: NP_001 YTKLSYRVVFPLELRLFNTSSDAVNLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLL 160 170 180 190 200 210 340 350 360 370 pF1KE3 FDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFYQSRD ::::::: NP_001 FDDDIVEVGLQIILQ 220 >>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 252 init1: 177 opt: 421 Z-score: 458.3 bits: 94.8 E(85289): 8.6e-19 Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:588-918) 10 20 30 40 50 60 pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR :: :.::::: ::.:: : :: : XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR 560 570 580 590 600 610 70 80 90 100 110 120 pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM . . .. .: . .. ..... : . . : :: : . : :. : .: XP_016 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS 620 630 640 650 660 670 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE-- :::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..: XP_016 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI 680 690 700 710 720 730 180 190 200 210 220 pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY .::: . . ..::::. : : :. ::. . .... : ::: ::. : : .. XP_016 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN 740 750 760 770 780 790 230 240 250 260 270 280 pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN ..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_016 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ 800 810 820 830 840 290 300 310 320 330 340 pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE : . :.: .: : : : . ::: : :. .. :. ::: : :...... XP_016 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK- 850 860 870 880 890 900 350 360 370 pF1KE3 FYGLTSDISKNSESGYILFYQSRD : ..::::: : XP_016 -----------SSAAYILFYTSLGPRVTDVAT 910 920 >>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa) initn: 252 init1: 177 opt: 421 Z-score: 458.3 bits: 94.8 E(85289): 8.6e-19 Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:588-918) 10 20 30 40 50 60 pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR :: :.::::: ::.:: : :: : XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR 560 570 580 590 600 610 70 80 90 100 110 120 pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM . . .. .: . .. ..... : . . : :: : . : :. : .: XP_016 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS 620 630 640 650 660 670 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE-- :::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..: XP_016 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI 680 690 700 710 720 730 180 190 200 210 220 pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY .::: . . ..::::. : : :. ::. . .... : ::: ::. : : .. XP_016 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN 740 750 760 770 780 790 230 240 250 260 270 280 pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN ..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_016 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ 800 810 820 830 840 290 300 310 320 330 340 pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE : . :.: .: : : : . ::: : :. .. :. ::: : :...... XP_016 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK- 850 860 870 880 890 900 350 360 370 pF1KE3 FYGLTSDISKNSESGYILFYQSRD : ..::::: : XP_016 -----------SSAAYILFYTSLGPRVTDVAT 910 920 >>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa) initn: 252 init1: 177 opt: 421 Z-score: 457.8 bits: 94.8 E(85289): 9.2e-19 Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:672-1002) 10 20 30 40 50 60 pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR :: :.::::: ::.:: : :: : NP_001 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR 650 660 670 680 690 700 70 80 90 100 110 120 pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM . . .. .: . .. ..... : . . : :: : . : :. : .: NP_001 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS 710 720 730 740 750 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE-- :::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..: NP_001 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI 760 770 780 790 800 810 180 190 200 210 220 pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY .::: . . ..::::. : : :. ::. . .... : ::: ::. : : .. NP_001 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN 820 830 840 850 860 870 230 240 250 260 270 280 pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN ..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : . NP_001 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ 880 890 900 910 920 930 290 300 310 320 330 340 pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE : . :.: .: : : : . ::: : :. .. :. ::: : :...... NP_001 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK- 940 950 960 970 980 990 350 360 370 pF1KE3 FYGLTSDISKNSESGYILFYQSRD : ..::::: : NP_001 -----------SSAAYILFYTSLGPRVTDVAT 1000 1010 >>XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 252 init1: 177 opt: 421 Z-score: 457.3 bits: 94.8 E(85289): 9.8e-19 Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:749-1079) 10 20 30 40 50 60 pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR :: :.::::: ::.:: : :: : XP_006 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR 720 730 740 750 760 770 70 80 90 100 110 120 pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM . . .. .: . .. ..... : . . : :: : . : :. : .: XP_006 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS 780 790 800 810 820 830 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE-- :::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..: XP_006 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI 840 850 860 870 880 890 180 190 200 210 220 pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY .::: . . ..::::. : : :. ::. . .... : ::: ::. : : .. XP_006 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN 900 910 920 930 940 950 230 240 250 260 270 280 pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN ..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_006 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ 960 970 980 990 1000 1010 290 300 310 320 330 340 pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE : . :.: .: : : : . ::: : :. .. :. ::: : :...... XP_006 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK- 1020 1030 1040 1050 1060 350 360 370 pF1KE3 FYGLTSDISKNSESGYILFYQSRD : ..::::: : XP_006 -----------SSAAYILFYTSLGPRVTDVAT 1070 1080 >>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa) initn: 252 init1: 177 opt: 421 Z-score: 457.3 bits: 94.8 E(85289): 9.8e-19 Smith-Waterman score: 469; 31.0% identity (57.1% similar) in 352 aa overlap (40-368:749-1079) 10 20 30 40 50 60 pF1KE3 FASICTMGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQAL--------YFCR :: :.::::: ::.:: : :: : XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNR 720 730 740 750 760 770 70 80 90 100 110 120 pF1KE3 PFREKVLAYKSQPRKKESLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYM . . .. .: . .. ..... : . . : :: : . : :. : .: XP_016 NCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRY--ISPKDFKITIGKINDQFAGYS 780 790 800 810 820 830 130 140 150 160 170 pF1KE3 QQDAHEFLNYLLNTIADILQEERKQEKQNGRLPNGNIDNENNNSTPDPTW-----VDE-- :::..:.: .:. : :.:. .. . : . : :. .. .. . .: ..: XP_016 QQDSQELLLFLM----DGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI 840 850 860 870 880 890 180 190 200 210 220 pF1KE3 ---IFQGTLTNETRCLTCETISSKDEDFLDLSVDVEQNTSIT--HCLRGFSNTETLCSEY .::: . . ..::::. : : :. ::. . .... : ::: ::. : : .. XP_016 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN 900 910 920 930 940 950 230 240 250 260 270 280 pF1KE3 KYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLE-LRLFN ..:: .::..... :.... ::: .: .:::::.: . .. ::. : :::: : : . XP_016 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ--KLQTSVDFPLENLDLSQ 960 970 980 990 1000 1010 290 300 310 320 330 340 pF1KE3 TSGDATNPDRMYDLVAVVVHCGSGPNRGHYIAIVKS--HDFWLLFDDDIVEKIDAQAIEE : . :.: .: : : : . ::: : :. .. :. ::: : :...... XP_016 YVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK- 1020 1030 1040 1050 1060 350 360 370 pF1KE3 FYGLTSDISKNSESGYILFYQSRD : ..::::: : XP_016 -----------SSAAYILFYTSLGPRVTDVAT 1070 1080 370 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 22:37:21 2016 done: Sun Nov 6 22:37:22 2016 Total Scan time: 7.970 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]